Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00063 ATGTCAGGAATACTTTTACTATGCAGTGAAGAGGTAGTTGTTGCAGCTGAGGCACCTGCTGCCATTCCCGGTGAGCCCATGGACATCATGACTGCTTTACAGCTTGTGCTGAGAAAATCTCTGGCTTACGGTGGTCTTGCAAGAGGTCTTCACGAAAGTGCCAAGATCATTGAGAAGCATGCTGCACAGCTCTGCGTTCTAGCAGAAGATTGTGACCAACCTGATTATGTCAAACTTGTGAAGGCCCTTTGCGCCGAGCACAATGTTAGCCTTTTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTATGTAAGATTGACTCAGAAGGAAAGGCTAGGAAGGTAACTGGTTGCTCATGTGTGGTCGTTAAGGATTTTGGCGAGGAACATGAGGCCTATAATGTGGTTCTGCAGCACGTGAAAGCTAACTAA 441 0.4717 MSGILLLCSEEVVVAAEAPAAIPGEPMDIMTALQLVLRKSLAYGGLARGLHESAKIIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00063 146 PRINTS Ribosomal protein S12E family signature 116 129 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vimu4g00063 146 PRINTS Ribosomal protein S12E family signature 91 112 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vimu4g00063 146 PRINTS Ribosomal protein S12E family signature 36 49 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vimu4g00063 146 PRINTS Ribosomal protein S12E family signature 50 66 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vimu4g00063 146 FunFam 40S ribosomal protein S12 13 146 - -
Vimu4g00063 146 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 32 125 IPR004038 -
Vimu4g00063 146 SUPERFAMILY L30e-like 26 144 IPR029064 -
Vimu4g00063 146 Gene3D - 11 146 IPR029064 -
Vimu4g00063 146 PANTHER 40S RIBOSOMAL PROTEIN S12 21 145 - -
Vimu4g00063 146 ProSitePatterns Ribosomal protein S12e signature. 32 50 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00063 Vimu-Chr4 338123 339534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00063 22 146 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.200 3.32e-67 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00063 K02951 - gmx:100500093 257.684