Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00062 ATGCCTTCTGCCGAATCATTGCCACCTTCCTCCCAAACAATCTGTGTCACCGGCGCCGGTGGCTTCATCGCATCTTGGATGGTAAAACTTCTCTTGGAGAAAGGCTACACTGTGAGAGGAACACTCAGAAACCCAGATGATCCCAAGAATGGACACTTGAAAGAGTTTGAAGGAGCCACCGACAGACTAACTCTGCATAAGGTTGACCTCCTTGACGTTGACTCCGTTAGATCAGTAATTCACGGCTGCCATGGTGTCTTTCACACAGCTTCTCCCGTCACTGATAACCCCGAAGAAATGGTGGAGCCAGCAGTGAATGGAGCGAAGAATGTTATCATAGCAGCTGCAGAGGCAAAAGTACGACGTGTGGTGTTCACCTCATCGATTGGTGCCGTATACATGGACCCCAAAAGGAGCATCGATTTGGTGGTTGACGAGTCTTGTTGGAGTGATTTAGAGTATTGCAAGAACACTAAGAATTGGTACTGCTATGGGAAAGCTGTGGCTGAACAAGCAGCATGGGACACTGCCAAAGAAAAAGGAGTGGACTTGGTTGTAGTGAACCCAGTATTGGTTCTTGGACCATTACTACAACCAACCATCAATGCTAGCACGATTCACATCCTCAAGTACCTCACGGGCTCTGCTAAGACCTATGCAAATGCCACGCAGGCTTATGTGCATGTGAGGGATGTGGCATTGGCCCACATACTTGTTTATGAGAAGTGTTCCGATGAAAAGAATCCCAGGGCAAAACCATACACCTTTTCAAACCAGAAGCTCAAAGATTTGGGATTGGAATTCACTCCAGTGAGTCAGTGTCTTTATGAAACGGTTAAGAGTCTGCAGGAGAAAGGGCACCTTCCTGTTCCTGCAAAGCAGGAAGATTCAACTACAGTGAAATCATGA 909 0.4719 MPSAESLPPSSQTICVTGAGGFIASWMVKLLLEKGYTVRGTLRNPDDPKNGHLKEFEGATDRLTLHKVDLLDVDSVRSVIHGCHGVFHTASPVTDNPEEMVEPAVNGAKNVIIAAAEAKVRRVVFTSSIGAVYMDPKRSIDLVVDESCWSDLEYCKNTKNWYCYGKAVAEQAAWDTAKEKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKCSDEKNPRAKPYTFSNQKLKDLGLEFTPVSQCLYETVKSLQEKGHLPVPAKQEDSTTVKS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00062 302 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 283 IPR036291 -
Vimu4g00062 302 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 274 - -
Vimu4g00062 302 CDD FR_SDR_e 15 266 - -
Vimu4g00062 302 FunFam Cinnamoyl-CoA reductase 1 8 244 - -
Vimu4g00062 302 Gene3D - 6 302 - -
Vimu4g00062 302 Pfam NAD dependent epimerase/dehydratase family 14 249 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00062 Vimu-Chr4 332741 336020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00062 11 241 Monolignol Biosynthesis Gene Families AT1G80820 74.026 4.60e-120 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00062 K09753 - gmx:100789070 540.806