Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00058 ATGGTTTTCTTACAAACCTTGTTCTTCCTTTTACTTGTAACATTTGGTCACTCTTTTCCAAGGCACCACCACCCTTTTCATTCTTTACTCACCGATAGAGCTGCGCTTCTGGAATTCAGAAAAACAATCGTATCAGACCCGTTTTCCTCACTTGCAAACTGGGATGAAGCTGTTCCTGTGTGCAACTTCACGGGTGTTGAATGTGACAGATCCCATAATCGTGTTATACGACTAATCCTATATGATAAAGGTCTTGTGGGGCTCCTTTCACCTGTTCTTTCCAATCTCACTGGACTGCATAACCTTGAGATAGTTCGAAGTCACCTATTTGGTATTATTCCCCCTGAATTTTCCAACCTCAGACGCATTCACAGCATCATCATTGAAGGGAATAATTTGCATGGCTCAATACCAGATTCCTTTTCCATGCTTTCCAAGCTTAACATTCTAGTCGTTAAGGAAAATAACATATCGGGTTCGCTTCCTCCATCTCTCTTTTCAAACTGCACTCTGCTAAATGTTGTAGACTTCTCCAGCAACTCATTAAGTGGTCAAATCCCTGAAGAGATTGGAAACTGCAAAATCCTGTGGAGTATCAGTTTATACAATAATCAATTCACTGGTCACCTTCCTCTCTCACTGACCAATCTATCGCTTCAACATTTAGATGTGGAGTACAATTATCTATCTGGCGAATTACCTTCTAAGTTTGTTGGCAGCTGGCCTTATCTCCTTTACCTTCATTTATCATACAACAATATGGTAAGCCATGATAGCAACACCAATCTTGATCCATTTTTCACTGCTCTCAAAAACAACAGTAATCTAGAGGAACTTGAATTGGCGGGAATGGGCCTCGGGGGAAGGTTCACCGATACTCTCCCCAGCCAACTCACCAACCTAAGAACCCTGCTACTTCAGGAAAACCAAATTTTTGGATCAATTCCTCGCAGCTTAGCCAACCTTTCAAGGCTTTTCATTCTGAATTTAACATCCAATCTTCTGAATGGAACTATATCTTCAGATATATTCACATTGCCATGGTTGGAACAACTTTTCTTGTCACAAAACCATTTCAAAAGTCCACTTCCAGAAGCAATAGGCAAGTGTCTCAATCTGGGTCTATTGGATCTGTCACATAACCAATTCTCAGGTACGATTCCAGACAGTTTGGGAAATTTGGTTAGACTAAATTCATTGTTTCTCAACAATAATCTTCTCTCAGGAACAATACCTCCCACATTGGGACGGTGCAGTAATCTGTACAGGCTTGATTTATCCCACAATAGATTAACAGGAAGCATCCCACTGAAATTGGCAGGCTTGCGTGAGATCAGAATTTTCATAAATATTTCTCATAACCACCTTGAAGGTGACCTGCCGATTGAGCTCAGCAAATTAGAAAAGGTTCAGGAGATAGATCTTTCGTCGAACTACCTGACTGGAAGTATCTTCCCTCAGATATCAGGATGTATTGCTGTTTCAATGATTAATTTTTCGAACAACCTCCTTCAAGGGGAGATCCCTCAGTCCCTGGGTGATCTGAGGAACCTTGAATCTTTTGATGTTTCACGAAATCAATTATCTGGATTGATACCAGCAAAACTTGGTAAAATTGAAACGCTCACTTTTCTCAATTTATCATTTAACAATCTGGAAGGAAAGATTCCATCTGGTGGTATCTTTAATTCAGTTTCAAACTTGTCATTCTTAGGGAATCCAAAACTCTGCGGGAAGATTGAAGGCGTATCTTTGTGCTCTCAAAGGAGAAGATGGATTCATGCTCGTTTGTTATTGATTATATTGATTTTGGTGATCTTCGTATCAACCTTGTTGTCAATAATTTTCTGTGTAATTGGATGCAAGCATCTTAAAGTAATGATCAGCTCTCAGAGGACCGAGGCAAGAAAAAATGCAGCTAGAACAGAGTTGATTAGTAACTTCCCAAGAATCACGTACAAGGAACTGTCAGAGGCCACTGGAGGATTTGACAATCAGAGACTTGTTGGATCAGGTAGTTATGGACATGTCTATAGAGGTGTTCTCGCGGATGGGACACCAATAGCAGTCAAGGTGCTGCATTTGCAATCTGGAAATTCTACCAAGAGCTTTAACAGAGAATGCCAAGTTTTGAAGAGAATTAGACACAGGAATCTTATAAGGATTATCACAGCATGTAGCCTACCCGATTTTAAGGCTCTTGTTCTACCTTATATGGTCAATGGCAGCTTGGAGTGTCGCCTCTATCCTTCTTCTGGATCATCAGACTTGAGTATTGTCCAGAGGGTGAATATTTGCAGTGATATAGCTGAAGGGATGGCCTATTTGCATCATCATTCTCCTGTCAGAGTCATACACTGTGATCTAAAACCAAGCAATTGTCTCCTCAATGATGACATGACAGCTCTCGTCTCTGATTTTGGGGTTGCAAGACTGCTTATGAGTGCTGGAGTTGGGGCTACTGATAACATGGGCAACTCTAGTGCAAATTTGCTTTTTGGATCTATTGGATACATTGCACCAGGTAATCTGTGTATCTTGCAAAATTAA 2550 0.4067 MVFLQTLFFLLLVTFGHSFPRHHHPFHSLLTDRAALLEFRKTIVSDPFSSLANWDEAVPVCNFTGVECDRSHNRVIRLILYDKGLVGLLSPVLSNLTGLHNLEIVRSHLFGIIPPEFSNLRRIHSIIIEGNNLHGSIPDSFSMLSKLNILVVKENNISGSLPPSLFSNCTLLNVVDFSSNSLSGQIPEEIGNCKILWSISLYNNQFTGHLPLSLTNLSLQHLDVEYNYLSGELPSKFVGSWPYLLYLHLSYNNMVSHDSNTNLDPFFTALKNNSNLEELELAGMGLGGRFTDTLPSQLTNLRTLLLQENQIFGSIPRSLANLSRLFILNLTSNLLNGTISSDIFTLPWLEQLFLSQNHFKSPLPEAIGKCLNLGLLDLSHNQFSGTIPDSLGNLVRLNSLFLNNNLLSGTIPPTLGRCSNLYRLDLSHNRLTGSIPLKLAGLREIRIFINISHNHLEGDLPIELSKLEKVQEIDLSSNYLTGSIFPQISGCIAVSMINFSNNLLQGEIPQSLGDLRNLESFDVSRNQLSGLIPAKLGKIETLTFLNLSFNNLEGKIPSGGIFNSVSNLSFLGNPKLCGKIEGVSLCSQRRRWIHARLLLIILILVIFVSTLLSIIFCVIGCKHLKVMISSQRTEARKNAARTELISNFPRITYKELSEATGGFDNQRLVGSGSYGHVYRGVLADGTPIAVKVLHLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMVNGSLECRLYPSSGSSDLSIVQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNCLLNDDMTALVSDFGVARLLMSAGVGATDNMGNSSANLLFGSIGYIAPGNLCILQN 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00058 849 FunFam LRR receptor-like serine/threonine-protein kinase EFR 290 591 - -
Vimu4g00058 849 ProSitePatterns Protein kinases ATP-binding region signature. 669 691 IPR017441 GO:0005524
Vimu4g00058 849 FunFam Os07g0541700 protein 739 825 - -
Vimu4g00058 849 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 268 843 - -
Vimu4g00058 849 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vimu4g00058 849 SUPERFAMILY Protein kinase-like (PK-like) 642 841 IPR011009 -
Vimu4g00058 849 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 643 738 - -
Vimu4g00058 849 Gene3D Ribonuclease Inhibitor 31 144 IPR032675 -
Vimu4g00058 849 Gene3D Ribonuclease Inhibitor 145 218 IPR032675 -
Vimu4g00058 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Vimu4g00058 849 FunFam Leucine-rich repeat receptor-like protein kinase 30 188 - -
Vimu4g00058 849 Gene3D Phosphorylase Kinase; domain 1 644 738 - -
Vimu4g00058 849 ProSiteProfiles Protein kinase domain profile. 663 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00058 849 SUPERFAMILY RNI-like 75 360 - -
Vimu4g00058 849 SMART LRR_typ_2 144 168 IPR003591 -
Vimu4g00058 849 SMART LRR_typ_2 515 538 IPR003591 -
Vimu4g00058 849 SMART LRR_typ_2 298 322 IPR003591 -
Vimu4g00058 849 SMART LRR_typ_2 394 418 IPR003591 -
Vimu4g00058 849 SMART LRR_typ_2 346 370 IPR003591 -
Vimu4g00058 849 Gene3D Transferase(Phosphotransferase) domain 1 739 845 - -
Vimu4g00058 849 ProSiteProfiles Leucine-rich repeat profile. 420 443 IPR001611 GO:0005515
Vimu4g00058 849 SUPERFAMILY L domain-like 321 578 - -
Vimu4g00058 849 Pfam Protein kinase domain 664 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00058 849 SMART serkin_6 663 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00058 849 Gene3D Ribonuclease Inhibitor 219 591 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00058 Vimu-Chr4 317508 320057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00058 31 841 Receptor kinase-like Gene Family AT3G47570 35.698 2.63e-144 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu4g00058 Pkinase 8.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00058 - - gmx:100815766 1412.9