Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00054 ATGGCTGCCAAAACCTCACACAAAACCCTCTGCGTCGACTCTCCCATGCTCAAGAAGAAGCGCCCGCGCAAAACCATTCCAAGAGACACTCCCTTGCCACGAACCTCACCCTACAGGGGTGTTACCAGGCATCGATGGACAGGTCGATACGAGGCTCATCTCTGGGATAAAACTTCCTGGAATCAAGCGCAGAACAAGAAAGGAAGACAAGGAGCATACGACGATGAAGATGCTGCGGCACGTGCTTACGATTTGGCAGCATTGAAGTATTGGGGTCCGGAAACCGTCCTCAATTTCCCGGTAAATCTTTTCGTTGAATCCTTCAGACGAACTTTCGTTGCTTCATGA 348 0.5057 MAAKTSHKTLCVDSPMLKKKRPRKTIPRDTPLPRTSPYRGVTRHRWTGRYEAHLWDKTSWNQAQNKKGRQGAYDDEDAAARAYDLAALKYWGPETVLNFPVNLFVESFRRTFVAS 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00054 115 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vimu4g00054 115 PRINTS Ethylene responsive element binding protein signature 82 102 IPR001471 GO:0003700|GO:0006355
Vimu4g00054 115 ProSiteProfiles AP2/ERF domain profile. 37 100 IPR001471 GO:0003700|GO:0006355
Vimu4g00054 115 Pfam AP2 domain 38 92 IPR001471 GO:0003700|GO:0006355
Vimu4g00054 115 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 102 - -
Vimu4g00054 115 SUPERFAMILY DNA-binding domain 36 102 IPR016177 GO:0003677
Vimu4g00054 115 Gene3D AP2/ERF domain 37 102 IPR036955 GO:0003700|GO:0006355
Vimu4g00054 115 FunFam AP2-like ethylene-responsive transcription factor 36 102 - -
Vimu4g00054 115 SMART rav1_2 37 106 IPR001471 GO:0003700|GO:0006355
Vimu4g00054 115 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00054 Vimu-Chr4 305497 306138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00054 12 114 AP2-EREBP Transcription Factor Family AT1G72570 54.867 2.22e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu4g00054 AP2 2.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00054 K09285 - jre:109011037 138.272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00054 4 305497 306138 Vimu4g00054 4 305497 306138 ECH