Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00053 ATGAGTTTATGCAATGCAGGTACAGAAGAAGAAGCAGCAGTGGCGTACGATATGGCGGCCATAGAATACCGTGGACTTAATGCTGTTACCAACTTTGACCTCAGTCGTTATATGAAATGGCTACGTCCAAAAGACCAACCCCAACCTCAACTTCAAGCCCACAATGACAGCCCAAGCCCAAGCCCAACACCATCTGGATCTGCAACATTGGGCCCTCCACCGCCGCCGCCACCTTCTTCACCGTCCACCTCAAACCTTCCTCCTCATCCTCCACGCACATTCCCCGAAGATATTCAAACTTTGTTTGAAACTCAAGATTCAGCTGGAATCTACACAGACACTGATGACATTATATTTGGCGACTTGACCTCCATTGCTTCACCAATTTTTCATTGTGACCTTAATGCTTGA 411 0.4745 MSLCNAGTEEEAAVAYDMAAIEYRGLNAVTNFDLSRYMKWLRPKDQPQPQLQAHNDSPSPSPTPSGSATLGPPPPPPPSSPSTSNLPPHPPRTFPEDIQTLFETQDSAGIYTDTDDIIFGDLTSIASPIFHCDLNA 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00053 136 SUPERFAMILY DNA-binding domain 8 35 IPR016177 GO:0003677
Vimu4g00053 136 Gene3D AP2/ERF domain 3 35 IPR036955 GO:0003700|GO:0006355
Vimu4g00053 136 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 67 - -
Vimu4g00053 136 MobiDBLite consensus disorder prediction 41 98 - -
Vimu4g00053 136 ProSiteProfiles AP2/ERF domain profile. 1 33 IPR001471 GO:0003700|GO:0006355
Vimu4g00053 136 MobiDBLite consensus disorder prediction 48 64 - -
Vimu4g00053 136 MobiDBLite consensus disorder prediction 65 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00053 Vimu-Chr4 303217 303627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00053 1 135 AP2-EREBP Transcription Factor Family AT1G16060 37.126 2.49e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00053 K09285 - gmx:100807781 125.176