Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00052 ACGATGAAGAAGACGAATGCTTTGTCGGTCTCAACCACACGCACTTACAGTTCTCTTTACTTCAATCCTCTGAATCACCCCAGCCACTGCCGAAGCTCCAGCACCGACTGTGTCGGAAAATCTCAGTTTGAATTTGAAGATGAGCACCCCGACAAGGAAAATCACAATGTCAATGTCAACAAGCCCAAGCCTTTCAGGTCTCTCTCCACTGACAGAATCTTGAAGCCCTCCTCGCTTGAATTCTGCATGCAGATGAACCACTTTCAAACCTCCCTCAACATCTGGGACTACTCTGATTCCGAGTCTGCTCCTGCTTCCTCCTGGTCAACACTGCCTAACAAGTCCTTGATCTGCAGACCCTTGCCCTTAGATGTTGGAAGGTGCACATGTTTTATTCTCAAAGAGCCAACGCCACATGGACTGTCAGGGGGCACTTTCTTCTCTCTTTATACCAATGAAGGCCAGGGACGGCAGAACAGGAAACTGGCCGTGGCCCACCACAAACGGCGGAATGGAAGGTCTTACTTCACCGTAGCTCAGAATGTAAAAGGGTTACTCTCCCATTCTGATGATACTTTTCTTGGCACAGTAACAGCTAACCTCATCGGCTCAAAATACTACATTTGGGATCAGGCGTATTGTCGTAATTCCGGCGGTAAACAACCAAAGCCACCTCTTGCTGTTGTGACCTATATACCCACCATAACAACGTGTACAGGTAGTCACAGAAGCATGAGAGCATATGTACCCAAGCATCAAAGCGTGCCACTCAAGAACACAAATCAGGTACAACATATAAAGGGATTGCCAATGAATTGGGAGGGAAAGCTGGACAAAGTCCATCAACTGTTCTCAAAGGCCCCACTTTACAACAAGATTTCAAAGCAATATGAGCTTGACTTCAGAGATAAAGGAAAGGCAGGACTCAAAATCCAAAGATCAGTTAAAAATTTCCAGCTAACTTTAGAGGAGAATGGGAGTCAGACGATACTGCAGCTGGGGAGGGCAGGAAAATCAAAATTCGTCATGGACTACAGCAATTACATTTTCCTCTGCGCCTCTCCAACTCTGCAGGCACCCTTTGACAGGTTACCAGGCGTTTTGCATGTGCTTAGCTTCCATGGATGCAAAGCTCTGTTGCACAGTGTAATGGGGAATTTCTGTTACCAAACTTGGTTCAATCTCTGA 1188 0.4646 TMKKTNALSVSTTRTYSSLYFNPLNHPSHCRSSSTDCVGKSQFEFEDEHPDKENHNVNVNKPKPFRSLSTDRILKPSSLEFCMQMNHFQTSLNIWDYSDSESAPASSWSTLPNKSLICRPLPLDVGRCTCFILKEPTPHGLSGGTFFSLYTNEGQGRQNRKLAVAHHKRRNGRSYFTVAQNVKGLLSHSDDTFLGTVTANLIGSKYYIWDQAYCRNSGGKQPKPPLAVVTYIPTITTCTGSHRSMRAYVPKHQSVPLKNTNQVQHIKGLPMNWEGKLDKVHQLFSKAPLYNKISKQYELDFRDKGKAGLKIQRSVKNFQLTLEENGSQTILQLGRAGKSKFVMDYSNYIFLCASPTLQAPFDRLPGVLHVLSFHGCKALLHSVMGNFCYQTWFNL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00052 395 PRINTS Tubby superfamily signature 306 322 IPR000007 -
Vimu4g00052 395 PRINTS Tubby superfamily signature 326 345 IPR000007 -
Vimu4g00052 395 PRINTS Tubby superfamily signature 193 217 IPR000007 -
Vimu4g00052 395 Pfam Tub family 119 346 IPR000007 -
Vimu4g00052 395 PANTHER TUBBY-RELATED 82 346 - -
Vimu4g00052 395 SUPERFAMILY Tubby C-terminal domain-like 105 346 IPR025659 -
Vimu4g00052 395 Gene3D Tubby Protein; Chain A 113 353 IPR025659 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00052 65 263 TUB Transcription Factor Family AT1G16070 55.251 4.86e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vimu4g00052 Tub 1.4e-28 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00052 K19600 - gmx:100803500 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00052 4 300632 302694 Vimu4g00052 4 300632 302694 ECH