Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00047 ATGACAGATGCGAGTGAGGAGGATAAGCAAGAAGGAAGTGAATTTGAAAAGAAAAGGGAAGAAAAATGGAGAGGGTGTGATGTGGAATGGAATCTCCAGATTGCAATTGGGAGCCCTGATATGAAGGGTTTGTGTTGGCATTGGATTTGGATGGATAAAGTTTGTCTGAACAGTGAGGCGGTAGGGGATGAAGAAGGCGAGAGCAATGTCCATGTCCATGTCCCTGTTGCTCCTGCGGTTGGGATGGAATTTGAGAGTTACGAGGATGTCTATTACTTCTATAATTGGTACGCCAAGGAACAGGGGTTTGGGATTAGGGTTACAAATACCTGGTACCGCAAGACCAAGGAACGTTACAGAGCGAAACTTAGCTGCAGCAGCGCAGGCTTCAAGAAAAGAACGGAGGCTAATCGCCCCAGACCCGAAACCAGGACTGGTTGTCCTGCTATGATCAAGTTCAGGTTGATGGATTCCACAAGATGGAGAATTATTGAAGTTGAGCTTGATCACAATCACTTGATTAACCCTACCAGTGGCAAGTTTTACAAGTCCCATAAGCAAGTTGCTCTTGGCACCAAAAGAACCTTCCACTTAGATGCTACTGCTGCTCAACAGGTTCACAAAATTAGGATGTTTCGAACTCTCATAATCGATGCTGAGGATGATGCCGGTGTACATCCCGATGAAGGGAAATCTCCAAATCCAAAAGGCTTGTACTCCAGTAATCAGTTGAAGCTGAAGAAAGGTGATGCTGAAGCAATTTTGAATTTTTTCAGTCACCAGCAATTGGCAGATCCAGATTTCTTCTATGTGGTCGATGTCAATGAGAGGGGGTGTTTCAGGAATTTGTTCTGGGCTGATGCAAAGTCCAGGGTTGCATACAGTTATTTCAGTGATGTTGTGGCAATTGACACTACATGTTTGAATGATACAGATGAAGTTCCCCTGGTTATGTTCCTTGGGATAAACCACCATAAACAATATATCTTGTTTGGCTGTGGACTGCTTGCTTGTGAAACGGTTGAATCATACACTTGGCTGTTCAGGGCGTGGCTTACGTGTATCTTAGGACGCCCCCCACAAGTTATCATTACCAACCAATGTGGAATCTTGCAAACTGTGGTTGCTGATGTTTTTCCAAGATCTACACACTGCCTTTGCTTGTTTAATATCATGCAAAAAGTTCCAGAAAAACTGGGAGCCTGCGTACAGTATGAAGCAATCAATGCAGCTTTGAGCAGAGCAGTATATTCCTCTCTTAGGGCTGAGGAATTTGAAGCAACTTGGGAGGATATGATGAAAAGCAGCGAAATTAGAGGCAATAAATGGCTCCAATCTTTGTATGAGGAACGGAAACGATGGGCTCCAGTTTATCTGAAGGAAATCTTCTTGGCAGGAATATTTTCAGTTCAACAAAGTGATGATGCTGTATCATTTTTCTTTGATGGGTACCTCGATGAACAGACTTCTCTGAAAGAATTTTTAGAAAAATATGATCAGACTTTGCAGACAAAGCGACAACTGGAAGCTTTGGCAGATTTGGATTCAAAATCTTGTAGCTTTGCAGCAAAATCGAGGTCTTACTTTGAATTGCAGATAAATGTTGATGGAGCGGTGATGACGTACATTGTGGAAGAACAAGTTGAAGTTGAGGGAAATCATAGAGGTGCAAGAGATTATGAGGTGTGTTATAATGAAGCTGAAATGGAGAGGTTACTTGTGCAGGCATGCTTTGTTTATTTTAAGCCAAAATGGGATAAAAGAGATCCCAAAAAAGATATGAAGCGGAGCAATGTGTACGATCATAAATGTAGTGGCATTGATATAAGTAATCCAGTTCATAGGTATGATCATTTATACAGACAGATTGTGAAGGTTGTAGAGGAAGGTAAGAAATCTCATCATCATTACAAGACTGCACTACAAGCAATGGAAAATATATTGAAGAAGCTTCATATTGTAAACGTTGAGGATCCCGACAACATATGTACAAGCATTGATGTCTGA 2007 0.4175 MTDASEEDKQEGSEFEKKREEKWRGCDVEWNLQIAIGSPDMKGLCWHWIWMDKVCLNSEAVGDEEGESNVHVHVPVAPAVGMEFESYEDVYYFYNWYAKEQGFGIRVTNTWYRKTKERYRAKLSCSSAGFKKRTEANRPRPETRTGCPAMIKFRLMDSTRWRIIEVELDHNHLINPTSGKFYKSHKQVALGTKRTFHLDATAAQQVHKIRMFRTLIIDAEDDAGVHPDEGKSPNPKGLYSSNQLKLKKGDAEAILNFFSHQQLADPDFFYVVDVNERGCFRNLFWADAKSRVAYSYFSDVVAIDTTCLNDTDEVPLVMFLGINHHKQYILFGCGLLACETVESYTWLFRAWLTCILGRPPQVIITNQCGILQTVVADVFPRSTHCLCLFNIMQKVPEKLGACVQYEAINAALSRAVYSSLRAEEFEATWEDMMKSSEIRGNKWLQSLYEERKRWAPVYLKEIFLAGIFSVQQSDDAVSFFFDGYLDEQTSLKEFLEKYDQTLQTKRQLEALADLDSKSCSFAAKSRSYFELQINVDGAVMTYIVEEQVEVEGNHRGARDYEVCYNEAEMERLLVQACFVYFKPKWDKRDPKKDMKRSNVYDHKCSGIDISNPVHRYDHLYRQIVKVVEEGKKSHHHYKTALQAMENILKKLHIVNVEDPDNICTSIDV 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00047 668 Pfam FAR1 DNA-binding domain 93 175 IPR004330 -
Vimu4g00047 668 Coils Coil 491 511 - -
Vimu4g00047 668 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 64 652 IPR031052 GO:0006355
Vimu4g00047 668 Pfam MULE transposase domain 300 394 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00047 Vimu-Chr4 251694 254132 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu4g00047 MULE 4.6e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00047 - K17604 gmx:100796267 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00047 4 251694 254132 Vimu4g00047 4 251694 254132 ECH