Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00044 ATGAAGCTCACCGTCAAGACTTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTATTATGGCTGTGAAGAAAAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGACAGCAATTGCTGATTCACAATGGTAAGGTTTTGAAAGATGAAACTACATTAGCAGACAATAAGGTCTCTGAGGATGGCTTTCTTGTTGTAATGCTTAGTAAGGTGAAGCGTGGGAAGGGTTTGTGCACCTGCCATGGCACTCCAATATTCCGAAGTTGGCATGATGACTCAGGGGTTAGTTATACGGAGATGATGATGACCTGGGTGGTAGTAAAACCTTGGGATCTGCTGGCACTTCATCAACCTGCTAGCAACCCACCTATAACTGTATCAACACCAAATTCCTCGTCTCTAGTACAAACCCAATCTGCTAACAATAATGCTCCTGCAACAGATGTCACAACTACAAATGTGACTACGGATACTTATGGCCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAGCAAATTATAGACATGGGTGGTGGCAGTTGGGACAGAGATACAGTTAGTCGTGCTCTCCGAGCAGCTTACAATAACCCAGAGCGTGCTGTGGACTACCTGTATTCAGGAATTCCTGAAGCAGCAGAAATTGCTGTGCCAGCTGCTCCTTACCCAAATAGTCAGACAACTGAAACAGGTGGGGTCACTGCCGGAGCTGTTCCTGGTGTCCCTAACTCGTCTCCCTTGAATATGTTTCCACAGGAGGCAATTTCTGGTGTTGGAGCCGGAATTGGGTCACTTGACTTTCTAAGAAACAATCCCCAGTTTCAAGCATTGCGATCAATGGTGCAATCCAATCCGCAAATTCTGCAGCCTGTACTTCAGGAGCTTGGAAAGCAAAATCCTGGTCTCTTAAGAGTAATTCAAGAGCATCATGCTGAGTTTCTCCAGTTGATTAACGAACCTATTGAGGGTTCAGAAGGTGATATATTTGATCAACCTGAGCAAGACATGCCTCATGCAATCAATGTGACGCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAAGCAATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTAGCATGTGACCGTGACGAGCAATTGGCAGCCAACTACTTATTAGAAAATGCTGGAGATTTTGAGGATTAA 1206 0.4469 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKVKRGKGLCTCHGTPIFRSWHDDSGVSYTEMMMTWVVVKPWDLLALHQPASNPPITVSTPNSSSLVQTQSANNNAPATDVTTTNVTTDTYGQAASNLVAGSNLEQTIQQIIDMGGGSWDRDTVSRALRAAYNNPERAVDYLYSGIPEAAEIAVPAAPYPNSQTTETGGVTAGAVPGVPNSSPLNMFPQEAISGVGAGIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRVIQEHHAEFLQLINEPIEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00044 401 FunFam UV excision repair protein RAD23 homolog 171 221 - -
Vimu4g00044 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 355 395 IPR015940 -
Vimu4g00044 401 SUPERFAMILY UBA-like 336 398 IPR009060 GO:0005515
Vimu4g00044 401 Gene3D - 348 396 - -
Vimu4g00044 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 176 219 IPR015940 -
Vimu4g00044 401 Pfam XPC-binding domain 276 331 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vimu4g00044 401 CDD Ubl_Rad23 1 74 - -
Vimu4g00044 401 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vimu4g00044 401 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 390 - -
Vimu4g00044 401 CDD UBA1_Rad23_plant 172 221 - -
Vimu4g00044 401 FunFam UV excision repair protein RAD23 homolog 348 396 - -
Vimu4g00044 401 NCBIfam UV excision repair protein Rad23 1 400 IPR004806 GO:0006289
Vimu4g00044 401 SMART ubq_7 1 75 IPR000626 GO:0005515
Vimu4g00044 401 Gene3D - 171 221 - -
Vimu4g00044 401 PRINTS DNA repair protein Rad23 signature 368 382 IPR004806 GO:0006289
Vimu4g00044 401 PRINTS DNA repair protein Rad23 signature 351 367 IPR004806 GO:0006289
Vimu4g00044 401 PRINTS DNA repair protein Rad23 signature 383 398 IPR004806 GO:0006289
Vimu4g00044 401 PRINTS DNA repair protein Rad23 signature 302 324 IPR004806 GO:0006289
Vimu4g00044 401 SUPERFAMILY XPC-binding domain 274 339 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vimu4g00044 401 FunFam UV excision repair protein RAD23 1 80 - -
Vimu4g00044 401 SMART CBM 274 317 IPR006636 -
Vimu4g00044 401 FunFam UV excision repair protein RAD23 B 266 332 - -
Vimu4g00044 401 Gene3D - 1 80 - -
Vimu4g00044 401 SUPERFAMILY Ubiquitin-like 1 77 IPR029071 -
Vimu4g00044 401 MobiDBLite consensus disorder prediction 133 155 - -
Vimu4g00044 401 SUPERFAMILY UBA-like 175 225 IPR009060 GO:0005515
Vimu4g00044 401 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vimu4g00044 401 Pfam UBA/TS-N domain 357 392 IPR015940 -
Vimu4g00044 401 Pfam UBA/TS-N domain 178 216 IPR015940 -
Vimu4g00044 401 Gene3D - 267 331 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vimu4g00044 401 SMART uba_6 357 394 IPR015940 -
Vimu4g00044 401 SMART uba_6 178 218 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00044 Vimu-Chr4 239787 250241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00044 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.892 1.62e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00044 K10839 - gmx:100804038 592.038