Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00041 ATGTTTTTGATGATGGAGTCAAGGAAAAGCGCAGTGTTGCTGATATTTGTTTCAGTTTCAGTGTGGCAGCTGCATGGTGGAAGTAGCAGTGTTGTGGTATCGAAGGATGGGAGTGGAGATTATAGGACGGTGGGTGAAGCCATTATGCAGGCTCCTGACATGAGTGATAAACCCTATACCATTCACGTACGAGCAGGCACTTATCAAGAGTACCTCTTCGTTCCTCCTCATAAGACTAACATTAGGCTCCTTGGAGATGGACCTCATCACACCAAAATAGTAGGCTACCAAAATGGTTCCACCATTGACATTCGTGGAGATGGGTTCATGGCAGCGAAGATGGGATTTGCGAACTGGGCAGGCTTGAATGCAAGTAGTGCAGTGGCGGTTCGGAACGAGGCAGACAAGAGCATATTCTTCCAATGCTCCATCGAAGGTCTCCAGGACACACTGTGGGCGGTTTCGGGGCGTCAGTTCTACAAAAAGTGCGATATCTACGGCACGGTGGACTTCATCTACGGCAGCGCAGCGGCGGTGTTCCAGGACTGCATGGTGTACGCGCGGTACAGAGAGTACGTGACGTTCACGGCTCAGTCGCGAGAGGATCCGAATGAGAAAAGCGGGTTTAGTTTCCAAAGATGCGAATTCAGAATGTCGCCGGAGGATGAGAACAGAAAGAGAGAGGTGCATGCGAGCCTTGGGCGTCCCCTGAGACCCTATTCCACCGTCGCCATCCTCCACTCGTACATTGACTCCATCGTCGATCCTAAAGGTTGGGAGCCCATGCCCCACCAGCCCACCGACAAAGTCACCTATATCGAGTTTCAGAATGTTGGGCCGGGCTCTAACACCGACGATAGAGTTAACTGGGCCGGCGTGACGGTCCTTAGACACCCGGCCCAAGCAGCCCATTTCACTGCCTCCTATCTCTTAGACGCCAACTCTTGGATTCCCTCCACCGGTGTTCCCTACGACACTGGACTATAG 987 0.5228 MFLMMESRKSAVLLIFVSVSVWQLHGGSSSVVVSKDGSGDYRTVGEAIMQAPDMSDKPYTIHVRAGTYQEYLFVPPHKTNIRLLGDGPHHTKIVGYQNGSTIDIRGDGFMAAKMGFANWAGLNASSAVAVRNEADKSIFFQCSIEGLQDTLWAVSGRQFYKKCDIYGTVDFIYGSAAAVFQDCMVYARYREYVTFTAQSREDPNEKSGFSFQRCEFRMSPEDENRKREVHASLGRPLRPYSTVAILHSYIDSIVDPKGWEPMPHQPTDKVTYIEFQNVGPGSNTDDRVNWAGVTVLRHPAQAAHFTASYLLDANSWIPSTGVPYDTGL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00041 328 Gene3D - 28 328 IPR012334 -
Vimu4g00041 328 FunFam Pectinesterase 28 323 - -
Vimu4g00041 328 PANTHER PECTINESTERASE 29 318 - -
Vimu4g00041 328 SUPERFAMILY Pectin lyase-like 30 326 IPR011050 -
Vimu4g00041 328 Pfam Pectinesterase 31 313 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00041 Vimu-Chr4 218080 219883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00041 29 328 Carbohydrate Esterase AT4G03930 41.853 1.77e-75 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00041 K01051 - gmx:102665195 503.827