Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00037 TTGACCCTAAGCTCTGCAGCTCAGTTCTGTCATCCTTTCTTATCTTGCTGGATCTGTGCTATCCTCTTCTCTGCTTCCCAGATGGGTTCACTCGAGGAGAAGATAGAGCGCGATCCTTTCGACAACCTTAACGATGACGACGACCACACTCCCTTCGCCTCTTCCCCATCCGCCTCCAAAGTCCGCCCCTTCAATTTCGAGACCACAGTTGTCGATTTACGGTCCTCCTCCGCCTTCAACATTAGACGCATCAGCAGGAGTATATATTTCGTCTTAATTAAGGCCAAGATCAACATCTTGCTTCCGTTTGGTCCTTTCGCTATTCTACTGCATTATCTCACTGGACACCAAGGATGGGTCTTCTTCTTCACGTTATTGGGTATTACTCCTTTGGCCGAACGTCTCGGTTATACCACCGAGCAGCTTGCCTTCTATACGGGACCCACAGGACCTAGTCTATCTTACTTGACCTTCTCACTATGTTCAATAACTAGTCATGTTGGGGGTCTGCTTAATGCCACATTTGGCAATGCAACTGAAATGATTATATCCATTTATGCATTGAAAAGCAATATGATGAGGGTTGTGAAGCAATCTTTACTCGGTTCTATCCTGTCAAATATGCTTCTGGTTCTTGGCTGTGCTTTCTTTACTGGTGGCATTGCCCACTACAAAAAAGTACAGGTTTTTGATAAGACTTTACACTGTAGTTTGCCTCTGCAACAGGCAGCTGCCATTGTCAATTCTGGGTTACTCTTGATGGCTGTAATGGGAATTCTGTTTCCTGCTGTGCTTTACTTTACTCACTCAGAAGTTCATGAAGGGAAGTCAGTGTTGTCTCTATCAAGATTTAGCAGCTGCATAATGCTGGTGGCATATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAGCAAAATGTTTATACTCCAGTTAATGAGGAAGGAGATGATGGTGAAAATTCTGACGAGGAAGAAGAACTTGAATTAACTCAATGGGAGGCAATAGCCTGGCTTGCTATTTTGACAGCATGGATGTCTATATTATCTGGATACCTTGTAGATACCATAGAGGCAAACGCTAATATTTCTGGTCTCTTGCAGGGTGCATCTAAGTCATTAAATATGTCGATGGCTTTTATTTCTGTCATCGTGCTTCCAATTGTTGGCAACGCTGCAGAACATGCCAGTGCTATCATGTTTGCCGTAAAGGACAAGCTTGATATTACTATTGGAGTTGCCATAGGATCGTCTACACAGATATCTATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACGCTTTTTATCACCGTGTTGGTAGTTGCGTTTATGATGCAGGAAGGAACCTCAAATTATTTTAAAGGCTTGATGCTTGTGCTGTGCTATCTTATAGTTGCTGCCAGTTTTTTTGTACATGATGACCCTATTAAAAGTGGTGAGTTACTTGGAGTATACTGCATAGTTTTGCAATAA 1524 0.4278 MTLSSAAQFCHPFLSCWICAILFSASQMGSLEEKIERDPFDNLNDDDDHTPFASSPSASKVRPFNFETTVVDLRSSSAFNIRRISRSIYFVLIKAKINILLPFGPFAILLHYLTGHQGWVFFFTLLGITPLAERLGYTTEQLAFYTGPTGPSLSYLTFSLCSITSHVGGLLNATFGNATEMIISIYALKSNMMRVVKQSLLGSILSNMLLVLGCAFFTGGIAHYKKVQVFDKTLHCSLPLQQAAAIVNSGLLLMAVMGILFPAVLYFTHSEVHEGKSVLSLSRFSSCIMLVAYASYLFFQLRSQQNVYTPVNEEGDDGENSDEEEELELTQWEAIAWLAILTAWMSILSGYLVDTIEANANISGLLQGASKSLNMSMAFISVIVLPIVGNAAEHASAIMFAVKDKLDITIGVAIGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLVLCYLIVAASFFVHDDPIKSGELLGVYCIVLQ 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00037 507 FunFam Vacuolar cation/proton exchanger 165 314 - -
Vimu4g00037 507 FunFam Vacuolar cation/proton exchanger 322 488 - -
Vimu4g00037 507 Pfam Sodium/calcium exchanger protein 119 301 IPR004837 GO:0016020|GO:0055085
Vimu4g00037 507 Pfam Sodium/calcium exchanger protein 335 484 IPR004837 GO:0016020|GO:0055085
Vimu4g00037 507 NCBIfam calcium/proton exchanger 91 487 - -
Vimu4g00037 507 NCBIfam calcium/proton exchanger 100 487 IPR004798 GO:0006816|GO:0015369
Vimu4g00037 507 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 73 492 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vimu4g00037 507 Gene3D - 164 313 IPR044880 -
Vimu4g00037 507 Gene3D - 321 488 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00037 Vimu-Chr4 204791 212597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00037 86 496 Antiporters AT3G13320 66.748 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00037 K07300 - gmx:100806000 676.781