Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00035 TTGCAGCGGTGCTTTCCAAAGGTGAGACCTTTACGCTTCTTCACCGCTGAAGCAATGCATTCCATCATCTTCGCCATGTGGCTTATTTTCTTGTCTTGCTTCTTTTATGCTGTCTCTGCACTCAGCTCCGATGGGGTCACCCTGTTGTCACTCACGAGGCACTGGAAATCCGTGCCTTCTTCCATAAACACCACCTGGCTTGCCTCTGATTCCACTCCATGCTCCTCCTGGGTAGGACTTCAATGTGACCATACCCACCATGTCATCTATCTTAACCTCACAGGTTATGGGATTTCTGGTCAATTAGGTCCTGAAATTGGAAACATTTCTCGCCTACAGTACTTAGACCTTACAGGTAACAACCTCAATGGCCCAATACCTCACTCCTTAAAAAACTTGCACAGCCTCCAGTTTCTCAGCCTTGCTCAAAATCAGCTATCTGGTGAAATTCCACATTCCTTGTCTCAAATACCTGGACTGCAGCTTGTTGATCTATCGTATAACCTTTTAAGGGGTTCCATCCCCACCAGCATTGGGAACATGTCTGAGCTCCTGCTGTTGTATCTTCAGAGTAACCAGTTGTCCGGGACAATTCCTTCATCCATTGGGAATTGCAGTAAATTGCTAGAATTGTATCTGGATAGGAATCAGTTGGAGGGTGTCCTGCCTCAGAGTCTAAATAATCTCGGTCTTCTGGATCATTTTGATGTTTCCGGTAATAGTCTTACGGGTACTGTTTCTTTGGGTTCAACTAGTTGTAAAAATTTAGTCTTTTTGGATCTCTCAGACAATGACTTTAGTGGTGGCCTTCCCTCAAGCCTGGGGAACTGTAGTAGTTTATCGGAACTTGTTGCCGTGAACTGCAATTTGGTAGGGAATATCCCACCCTCCTTTGGCCTGTTAACCAAGCTTTCGATTCTCTACCTTCCACTAAACCGTTTATCTGGAAAAATACCTCCAGAAATCGGCAACTGCAACTCTCTGACAGAGTTACAGCTGTATTCCAATCAACTTGAGGGAAACATTCCAAGTGAATTGGGAAAACTAAGAAAACTGGTGGATTTGCAATTGTTTTCAAATCAATTGACTGGTGAAATTCCACTCAGCATCTGGAAGATTAAAGGTCTTCAATCTCTGCATCTGTATAATAACAGTCTTTCTGGAGAGTTGCCATTGGAGATTGCAGAGCTCAGGCAGCTGAAAAACATCACTTTGTTTAACAACCAGTTTTCCGGTGTCATACCTCAAAACTTGGGAATTAACAGCAGTTTAGTTCTGTTGGACTTCACAAGTAATAAATTCACTGGCAACATCCCACCAAATCTGTGTTTTGGCAAGAAGTTAAAGATCCTGAATTTGGGCATCAATCAACTTCAAGGTAGCGTACCTCCTGATGTTGGGAGCTGTACAAGCCTTACAAGATTAATCCTCAAACAGAATAATTTTACTGGGCCTCTTCCTCATTTTAAGAGCTGTCAAAATCTCGTTTATATGGAGATTGGCAACAACAAAATTCATGGAACAATTCCATCAAGTTTGGGAAACTGCACACGTATCACTGACTTAATTCTGTCTATGAACAAATTTACAGGGCCAATACCATCAGAGCTAGGGAACCTGGTGAATCTTCGGACTCTGAAGCTCGCTCACAACAACTTAGAAGGTCCTTTGCCCTCTCAGCTATCAAAGTGCACCCAAATGGACAGGTTTGATGTCGGATTCAATTTCCTAAATGGTTCATTGCCATCAAGTCTGCAGAGCTGGACAAGGCTAACCACATTAATTTTGAGCGAGAATCGCTTTAGTGGGGGCCTCCCATCTTTCCTGTCGGAATTCAAAATGATTTCTGAGCTACAACTTGGTGGCAATCTGTTCGGAGGCAAAATTCCTATATCAGTTGGAGCAATGCAGAACTTGATCTATGGTTTGAATCTAAGTTCAAATAGGTTGACTGGTGAAATTCCTGTAGAGATTAGGAACCTGAAAATGTTGCGAACACTGGATCTGTCTCATAACAATTTGACAGGAAGCATAGAAGTTCTTGGTGAACTCATCTCCTTAGTGGAACTCAATATTTCATACAATTCTTTTCGTGGTCTTGTACCAAACAAGCTGATGAAGTTGCTTAATTGTCCCTTGTCATCGTTCCTGGGCAATCCTGGCCTATGCATCAGATGTTCAGCGTCAGATTGCTTGGCTTGCTCGGAAAGAAGCTCTCTAAAATCATGCGATGACAAATCTACTAAACGGAAAGGCTTGAGTAAAGTTCAAACTGTGAAGATGTTTCTTGGATTGTCCATATTTCTTGGTTTGTCGTTACTGGCATTAGTTTGTGTTATTGTTTTTGGGAGAACAGCTAAGCAGGAAAACCATATCTCTTCTGAACAGGGTTCTTCATCCCTTCTTAACAAAGTCATGGAGGCTACAGAAAACCTAAATGATCGATATATTATTGGTAGAGGAGCCCACGGAATTGTTTATAAAGTTGTGATAGGTCCAGACAAAGCTTTTGCGATGAAAAAGATAAGATTTACTGCGAGTCAAGGTAAGAACTCGAGCATGGCCAGAGAAATTCAGACCCTTGGGAAAATCAGGCATCGAAATCTTGTCAAATTGGAAGACTTTTGGTTGAGAAAAGATTGTGGTCTAATTTTGTACAGCTACATGGCAAATGGAAGTCTCCATGATGTTTTGCATGAAAGGGCTCCAACACCAACCTTAAAGTGGAATGTCCGGTATAAGATAGCTGTTGGAATTGCTCATGGATTAGCTTATCTCCACTATGACTGTGACCCTCCCATCGTGCACCGAGACATCAAGCCCAGCAATATACTTCTAGACTCTGACATGGTGCCTCACATTGCTGACTTTGGTATTGCCAAACTTCTGGAACAGTCTTCTCCTGCTTCAAATACTTCCATTGCTGTGCCGGGTACAATTGGTTATATTGCTCCAGAGAATGCTTATGCAACAAGAAGTAGTAGGGAGTCTGATGTGTACAGTTACGGGGTTGTTTTGCTTGAGCTGATAACAAGAAAGAAGGCAGCCACAGATCCTTCGTACGAGGATGGTGTTTTGGTGGATTGGGTTAGGTCTGTCTGGATGGAAACAGGACAAGTTCATCAAATTGCTGATTCAATACTTTCAGGAGAATTTGCTGATACCCATATAATGGAAAACCTTACCAAAGTGCTTATGGTTGGTTTGAGATGTACTGAGAAGGATCCACACAATAGACCCACAATGAGAGATGTTATTCATCAATTAAACTAG 3273 0.4225 MQRCFPKVRPLRFFTAEAMHSIIFAMWLIFLSCFFYAVSALSSDGVTLLSLTRHWKSVPSSINTTWLASDSTPCSSWVGLQCDHTHHVIYLNLTGYGISGQLGPEIGNISRLQYLDLTGNNLNGPIPHSLKNLHSLQFLSLAQNQLSGEIPHSLSQIPGLQLVDLSYNLLRGSIPTSIGNMSELLLLYLQSNQLSGTIPSSIGNCSKLLELYLDRNQLEGVLPQSLNNLGLLDHFDVSGNSLTGTVSLGSTSCKNLVFLDLSDNDFSGGLPSSLGNCSSLSELVAVNCNLVGNIPPSFGLLTKLSILYLPLNRLSGKIPPEIGNCNSLTELQLYSNQLEGNIPSELGKLRKLVDLQLFSNQLTGEIPLSIWKIKGLQSLHLYNNSLSGELPLEIAELRQLKNITLFNNQFSGVIPQNLGINSSLVLLDFTSNKFTGNIPPNLCFGKKLKILNLGINQLQGSVPPDVGSCTSLTRLILKQNNFTGPLPHFKSCQNLVYMEIGNNKIHGTIPSSLGNCTRITDLILSMNKFTGPIPSELGNLVNLRTLKLAHNNLEGPLPSQLSKCTQMDRFDVGFNFLNGSLPSSLQSWTRLTTLILSENRFSGGLPSFLSEFKMISELQLGGNLFGGKIPISVGAMQNLIYGLNLSSNRLTGEIPVEIRNLKMLRTLDLSHNNLTGSIEVLGELISLVELNISYNSFRGLVPNKLMKLLNCPLSSFLGNPGLCIRCSASDCLACSERSSLKSCDDKSTKRKGLSKVQTVKMFLGLSIFLGLSLLALVCVIVFGRTAKQENHISSEQGSSSLLNKVMEATENLNDRYIIGRGAHGIVYKVVIGPDKAFAMKKIRFTASQGKNSSMAREIQTLGKIRHRNLVKLEDFWLRKDCGLILYSYMANGSLHDVLHERAPTPTLKWNVRYKIAVGIAHGLAYLHYDCDPPIVHRDIKPSNILLDSDMVPHIADFGIAKLLEQSSPASNTSIAVPGTIGYIAPENAYATRSSRESDVYSYGVVLLELITRKKAATDPSYEDGVLVDWVRSVWMETGQVHQIADSILSGEFADTHIMENLTKVLMVGLRCTEKDPHNRPTMRDVIHQLN 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00035 1090 SUPERFAMILY L domain-like 415 732 - -
Vimu4g00035 1090 ProSiteProfiles Protein kinase domain profile. 812 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00035 1090 Gene3D Transferase(Phosphotransferase) domain 1 889 1090 - -
Vimu4g00035 1090 FunFam Serine/threonine-protein kinase-like protein CCR4 889 1090 - -
Vimu4g00035 1090 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 344 442 - -
Vimu4g00035 1090 Gene3D Ribonuclease Inhibitor 156 249 IPR032675 -
Vimu4g00035 1090 ProSiteProfiles Leucine-rich repeat profile. 663 685 IPR001611 GO:0005515
Vimu4g00035 1090 SUPERFAMILY RNI-like 91 441 - -
Vimu4g00035 1090 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Vimu4g00035 1090 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 250 342 - -
Vimu4g00035 1090 SUPERFAMILY Protein kinase-like (PK-like) 797 1089 IPR011009 -
Vimu4g00035 1090 Gene3D Ribonuclease Inhibitor 45 155 IPR032675 -
Vimu4g00035 1090 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 446 732 - -
Vimu4g00035 1090 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 351 1089 - -
Vimu4g00035 1090 ProSitePatterns Protein kinases ATP-binding region signature. 818 840 IPR017441 GO:0005524
Vimu4g00035 1090 Gene3D Ribonuclease Inhibitor 250 411 IPR032675 -
Vimu4g00035 1090 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 780 888 - -
Vimu4g00035 1090 Gene3D Phosphorylase Kinase; domain 1 782 888 - -
Vimu4g00035 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 934 946 IPR008271 GO:0004672|GO:0006468
Vimu4g00035 1090 Pfam Protein kinase domain 817 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00035 1090 SMART serkin_6 812 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00035 1090 SMART LRR_typ_2 301 325 IPR003591 -
Vimu4g00035 1090 SMART LRR_typ_2 661 684 IPR003591 -
Vimu4g00035 1090 SMART LRR_typ_2 133 157 IPR003591 -
Vimu4g00035 1090 SMART LRR_typ_2 206 228 IPR003591 -
Vimu4g00035 1090 SMART LRR_typ_2 540 564 IPR003591 -
Vimu4g00035 1090 SMART LRR_typ_2 181 205 IPR003591 -
Vimu4g00035 1090 Pfam Leucine rich repeat 110 170 IPR001611 GO:0005515
Vimu4g00035 1090 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 57 249 - -
Vimu4g00035 1090 Gene3D Ribonuclease Inhibitor 412 732 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00035 Vimu-Chr4 196141 199508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00035 32 1089 Receptor kinase-like Gene Family AT1G73080 51.463 0.0 1009
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu4g00035 Pkinase 5.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00035 - - vum:124843252 1857.42