Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00032 ATGCAATTAGCGTCGAATGGCGACATCGAAGCATGTTCAGAAAGCGAACCCATCTTGAATCACCACCATCTTCATTTGCAACCACCTGGAGAATCCTCCTTGTCCTGTGAAATTATTCCTATTGCTCCAAACCACGATGATGTCGACCATGATTTACCAAGTATTCGGGTTGATGAGATTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCACCATGCCATTGCAAAGGTACGCAAAAGTACGTTCACAGATCATGTCTTGATAATTGGAGATCCACCAAGGAGGGCTTCGCCTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGGGATCATGCATTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGATTGCTCTATGGCTTTTTCATAGCTATAATATGTGGCCAAAGAATTAATGAACGCCACTATCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGATCCTAGTCACGTGACAGAGCTAAGGATGTTGGGCCTTTACTAG 777 0.4144 MQLASNGDIEACSESEPILNHHHLHLQPPGESSLSCEIIPIAPNHDDVDHDLPSIRVDEICHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00032 258 SUPERFAMILY RING/U-box 66 122 - -
Vimu4g00032 258 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 191 258 - -
Vimu4g00032 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 123 IPR013083 -
Vimu4g00032 258 SMART ringv_2 70 119 IPR011016 GO:0008270
Vimu4g00032 258 Pfam RING-variant domain 71 118 IPR011016 GO:0008270
Vimu4g00032 258 CDD RING_CH-C4HC3_MARCH 71 119 - -
Vimu4g00032 258 ProSiteProfiles Zinc finger RING-CH-type profile. 63 125 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00032 Vimu-Chr4 181373 183876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00032 31 217 C3H Transcription Factor Family AT1G50440 65.969 1.96e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00032 - - vun:114185559 513.457