Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00023 ATGGAGATAATGTACTTGATGAAGTTAGGTCTTTCAGAAGAAGAGATAGCATTTATGGTACGCACATTTTCTCCTCTTCTTGGGTACAGTATAGAGGGGGTTCTTAAGCCAAAAATAGAATTCCTGGTGAACTCAATGGAGAGGCCAGTAAGAGATGTGGTGAGTTACCCTCGGTATTTTAGCTATTCACTAGAGAAGAAAATAAAGCCAAGATATTGGGTGTTGAAAAGAAGGGATATCAAATGTAGCTTAAAGGATATGCTGGGAAAAAATGATGAAGAATTTGCCGCTGAGTTTATGGGTATTGGAAGGATGCCCGTCTCTCATCCCGTTTCTTCTAATGATAGCCTGTAA 354 0.3955 MEIMYLMKLGLSEEEIAFMVRTFSPLLGYSIEGVLKPKIEFLVNSMERPVRDVVSYPRYFSYSLEKKIKPRYWVLKRRDIKCSLKDMLGKNDEEFAAEFMGIGRMPVSHPVSSNDSL 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00023 117 Gene3D Transcription termination factor 3, mitochondrial 2 103 IPR038538 -
Vimu4g00023 117 SMART mt_12 17 49 IPR003690 GO:0003690|GO:0006355
Vimu4g00023 117 SMART mt_12 50 81 IPR003690 GO:0003690|GO:0006355
Vimu4g00023 117 Pfam mTERF 3 96 IPR003690 GO:0003690|GO:0006355
Vimu4g00023 117 PANTHER CGI-12 PROTEIN-RELATED 3 100 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00023 Vimu-Chr4 116411 118769 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu4g00023 mTERF 1.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00023 K15031 - gmx:100802127 211.46