Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00019 ATGTGGCTTCCACATCCTAAAGGATCAGGGATTAGAAAGGGAGTAGGAGGAGGAGGCAATGGAATAGTAGCAGTGGCTATAGACAAGGATAAAGGAAGCCATTACGCTCTTAAATGGGCTGTTGATTGTCTGCTTGGCAGAGGTCAGACTTTGATTCTCCTCCACGTTTTGCACGGGACATCCTCACATGTTTCCAGGGGTAGCGAGGCTCTTGTTTGTAACATCACCAATTCAACTGTGTCTCCACAGAGATACCAACTGGATACCACTACCAAGGATTTGTTTCTCACTTTCCACTGCTATTGTACACGCAAAGATATACACTGCCTTGATGTCCTACTTGAAGACAATGATGTTGTGAAAGCAATAACGGAATATGTCTCTTATGCTGCGATTGAAAACTTGGTGCTTGGTGCAACATCCAGGCATGGGTTTATTCGATTTAAGTCATCATCATGTGCCTCAACTAGCATATCAAAGGGGGCGCCGGACTTTTGTACCGTGTTCATCATTTCAAAGGGAAAAATCTCTTCAGTTCGGAATGCTACTCGTCCAGCCGCGCATACATCTCCACTTCTGATCCATATACGTAATCTAAAGAACAAGGACGAAAATCATCAAGAAATACCCTTCAGAAATACGAATACGAGAGACAGGACGCCATTCAAACCTCAGAACTGGCACGATGAATCTATTCAGTCTCCATTTCCAAGAGGAAGAGGCACGAATAGATTGTCATGCGTGGACTTCCCAGACTCAGATACGGAAATATCATTTGTAAGCTCTGATAGGCCAAGCAGTTGTCGTTCGTCCTCCGTTTATGACTATATTGACGCAAGCCGAACTCCGCGGGCTTCTACCAGTTCAGATCATAGCTGTGGATCAACCCGATTGGGACTCAAGTTAAATGACCTCGGTTCACCCGATACCTCATTCTCTCACGAAAGCAGTAGAACATCATTCTCATATTCATCACAGAGCATGGATGAAGAAGCAGCAGAAGCTGATATGAAGAGGCTGAAGCTTGAGTTAAAGCAAACGATGGATATGTACAGTAAAGCATGCAGAGAAGCACTAACAGCCCAGCATAAGTTAATGGAGTTGACACACTGGAGAATTGAGGAAGAAAAAAAATTGGAAGAGGCACGATTGGCTGAGGAAGCTGCGCTGGCAATTGCAGAGAAAGAGAAAGCAAGATGTAGAGCAGCCATGGAAACTGCTGAAGCATCGAAGAAAATTGCTGAGGTTGAAACACACAAAAGAGCGACTGTTGAAGTTAAAGCTCTTAAAGAAGCAGAGGAAATGAGGAAGCTTTTGGACAATCTAGCCCAAACTGATGTAAGATATAGGAGATACTGTATAGAGGAGATTGAAGCAGCTACGAACTTCTTTTCTGAATCCCAGAAAATCGGAGAAGGAGGTTATGGCCCTGTTTTTAAATGTTTCCTTGATCACACTCCAGTTGCTGTCAAGGTTCTACGTCCAGATGCTGCTCAAGGGAAGTCACAGTTTCAGCAAGAGGTTGACATTCTGAGCTGCATGCGACACCCAAACATGGTGCTTCTTCTGGGAGCATGTCCGGAGTATGGCATATTGATATATGAATATATGGCTAATGGAAGCCTAGAAGATTGCCTGTTTCGAAAAAGGAAGAACAAAGTTCTGTCTTGGCAGCTGAGGTTCCGAATTGCTGCAGAGATAACGACGGGCCTTCTATTCCTGCATCAGACCAAGCCTGAACCTTTAGTGCACCGTGATCTGAAACCAGGCAACATTTTGCTAGACCAGAATTATGTGAGTAAGATAAGCGATGTTGGATTAGCAAGGCTTGTCCCAGCAGTTGCTGAAGACGTGACCCAATGCTGCATGACATCAGCAGCTGGAACATTTTGTTATATTGATCCTGAGTATCAGCAAACAGGAATGCTTGGGGTGAAGTCAGATGTTTATTCTCTAGGAATAATTTTTCTTCAACTATTGACTGGCAGACCTCCAATGGGTTTAGCTCACCATGCCGGGCAGGCTATAGAGAAGGAAACCTTTGAGGAAATGCTGGACCCATCTGTAACCGATTGGCCTCTTCAACAAGCCTTGTGCCTTGCAAACATAGCAGTCAAGTGTGCGGAACTTAGGCGAAAAGATAGGCCAGACCTTGCCAATGTGGTGTTGCCAGAGCTCGATAAATTGAGAGACTTTGCAGAAGAAAACATGACACTGCGATTGTTTCCCATCAATTTAGGAAGCACTGCGCCCTCTCCCTGCCACAGTGAAACTTCTGTGCAACAGGATGTGATAAGCGACCCACGCCTTGTACATTCCGTAGGCTCATCAGCTCCATCAACTCCTACAGAAGAAAAACATTAA 2364 0.4475 MWLPHPKGSGIRKGVGGGGNGIVAVAIDKDKGSHYALKWAVDCLLGRGQTLILLHVLHGTSSHVSRGSEALVCNITNSTVSPQRYQLDTTTKDLFLTFHCYCTRKDIHCLDVLLEDNDVVKAITEYVSYAAIENLVLGATSRHGFIRFKSSSCASTSISKGAPDFCTVFIISKGKISSVRNATRPAAHTSPLLIHIRNLKNKDENHQEIPFRNTNTRDRTPFKPQNWHDESIQSPFPRGRGTNRLSCVDFPDSDTEISFVSSDRPSSCRSSSVYDYIDASRTPRASTSSDHSCGSTRLGLKLNDLGSPDTSFSHESSRTSFSYSSQSMDEEAAEADMKRLKLELKQTMDMYSKACREALTAQHKLMELTHWRIEEEKKLEEARLAEEAALAIAEKEKARCRAAMETAEASKKIAEVETHKRATVEVKALKEAEEMRKLLDNLAQTDVRYRRYCIEEIEAATNFFSESQKIGEGGYGPVFKCFLDHTPVAVKVLRPDAAQGKSQFQQEVDILSCMRHPNMVLLLGACPEYGILIYEYMANGSLEDCLFRKRKNKVLSWQLRFRIAAEITTGLLFLHQTKPEPLVHRDLKPGNILLDQNYVSKISDVGLARLVPAVAEDVTQCCMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRPPMGLAHHAGQAIEKETFEEMLDPSVTDWPLQQALCLANIAVKCAELRRKDRPDLANVVLPELDKLRDFAEENMTLRLFPINLGSTAPSPCHSETSVQQDVISDPRLVHSVGSSAPSTPTEEKH 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00019 787 FunFam Os07g0541700 protein 537 629 - -
Vimu4g00019 787 Pfam Universal stress protein family 22 152 IPR006016 -
Vimu4g00019 787 Gene3D Transferase(Phosphotransferase) domain 1 537 740 - -
Vimu4g00019 787 Coils Coil 376 410 - -
Vimu4g00019 787 CDD STK_N 22 174 - -
Vimu4g00019 787 MobiDBLite consensus disorder prediction 214 240 - -
Vimu4g00019 787 MobiDBLite consensus disorder prediction 752 787 - -
Vimu4g00019 787 Coils Coil 330 357 - -
Vimu4g00019 787 PANTHER OS02G0152300 PROTEIN 23 752 - -
Vimu4g00019 787 ProSiteProfiles Protein kinase domain profile. 464 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00019 787 Gene3D HUPs 22 171 IPR014729 -
Vimu4g00019 787 Pfam Protein kinase domain 465 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00019 787 SMART serkin_6 464 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00019 787 MobiDBLite consensus disorder prediction 280 328 - -
Vimu4g00019 787 MobiDBLite consensus disorder prediction 306 328 - -
Vimu4g00019 787 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 436 536 - -
Vimu4g00019 787 SUPERFAMILY Protein kinase-like (PK-like) 448 722 IPR011009 -
Vimu4g00019 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Vimu4g00019 787 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 25 151 - -
Vimu4g00019 787 MobiDBLite consensus disorder prediction 204 244 - -
Vimu4g00019 787 MobiDBLite consensus disorder prediction 280 296 - -
Vimu4g00019 787 Gene3D Phosphorylase Kinase; domain 1 442 536 - -
Vimu4g00019 787 MobiDBLite consensus disorder prediction 752 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00019 Vimu-Chr4 106266 110179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00019 1 760 Receptor kinase-like Gene Family AT1G78940 56.978 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu4g00019 Pkinase 4.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00019 - - gmx:100801601 1180.62