Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00017 ATGGGGGCGCGCTCTGCTTCGGTGGTGCGCGCACCATTCATGAATGTGAAGCTGAAGCTGTGGTTTAGCTTGGTTAAGGGTAACGTAGTTGTGTTTGTATTGGCATCAATATTAATATCATCAAGCTGGTGCACATCAGCGAAAGCCATGTATTCTGATGCGGAGGCGCTGATGAAGTTCAAGAAGTCGTTGACAAACACAGTGGCCTTGGAAAGTTGGGATTCAACCACAAACTCAAAGCCACCTTGCTCTGGAAACATTCCAAACTGGGTCGGGTTGTTTTGTTTGAGGGACAAGGTTTGGGGGTTGCGACTCGAGAACATGGGCCTAACAGGCACAATCGATATAATGACTCTCGCTTCCATCCCCGCTCTCCGCTCTGTTAGCCTGATGAACAACACCTTTGTGGGTCCCTTGCCTAGCGTAAGGTTGCTGCCAAATCTCAAGGCCCTCTACCTCTCCTACAATCATTTCTCAGGACAGATTCCCGACGATGAATTTAAGGGTTTGCATAAATTGAGGAAACTTTATTTGTCCAATAATGAGTTCACAGGTCAAATTCCTTCCTCCATTGCCACCTTGCCTTCTCTCCTCATCCTCCGTCTCGACTCAAACAAGTTTCAAGGTCAAATCCCCCTCTTTCAGCACCTTAATACTACTAGTTATTATCCTTTGAGGATCATCAACTTTTCTAACAATCAGTTGGAGGGTCCCATTCCGCCCAGTCTAATCACCTTCGGCGCCTCCCCATTTAGCGGTAACCCTGGACTATGCGGGACGCCCCTCAAGAATGTGTGCCAAGAGGTAGCCACACCGTCCAAAATGCGTCTTCTAAAAATTTTACTAGCTATTGTCACGAGTGCATTAATTGTAGCCATCCTGGTTATAGTATTGGTGATATATCGGTTGAGATCACTGACATCCCAACTGCAACAACAATCTTCAGCAGAAGATCATATGGCCTCAACGTTGCAGGGCCAGGGCCAGGTCCAGGTCCAGGTTCCTCCCATTTATGTCAAAACTAAAAGCCTAGCGGATCACTACGATGCCAGTCCCAGGCAAGCGTCATCATTTCAGGGTCTTGGACGTGCACGTTCCAGGAGGGTGGAACCAGGCAAACTCATATTCCTCAGGCCTCAAGAACCTATGTTTGATTTGCAGGATTTGCTAAGGTCCTCCGCTGAAATTCTTGGAAGTGCAGGATTTGGCTCCTCCTACAAGGCCGTCATTTTAGACGGTTACCCCGTTGTTGTAAAGAGGTACAAGCATATGAACAATTTGCCCAGAGATGAGTTCCACGAGCACATGCGAAGACTAGCCAATCTCAACCATCCCAATCTTCTCCCTCTCCTCGCCTATTATTATAAAAGGGAAGAAAAGCTTCTCCTCTCTGCCTTTGTTCACAACGGTTGCTTGGCCAGTCATCTTCATGGCAATCATAACTCTCAAAAGCTTGGACTTGACTGGCCAACTCGTTTGAAAATCGTGAAAGGTATAGCCAGGGGTTTGGCTTACCTATACAGTGCACTCCCAAGCGTAATTGTGCCTCATGGTCATCTCAAATCTTCCAACGTCCTTTTGGATGAATCCTTCGAGCCCCTGCTCACTGATTATGCCCTCAGCCCCGTCATCAACCTTGACCATGCCCAAAAAGTTATCTTGCCTTACAAATCTCCAGAATATGCTCAACTTGGGCGCATTACAAAGAAGACTGATGTGTGGAGTTTTGGAATTCTGATTCTGGAGATCTTGACCGGCAAATTCCCTGAGAACTATCTCACACTTAGGCATAATACTGATTCTGACATAGCCAGTTGGGTCAATACCATGATTACTGAGAAACGCACCAGTGACATGTTTGACGTAGAGATGGGAGGAATTGGAAATTGTAAAGCTGAATTACTCAAACTCCTGAAGATTGGCTTGAGTTGTTGTGAGGAGAATGTGGAAAGAAGGCTGGATATCAAGGAAGCTCTTGAGCAAATTGAAGAGTTGAAAGAGAGCGAAAATGATGCTATTAATGGAGAATACTCCTCCACTCTCATCACCACAGAAAGAAATACTTATAGAGATGTCTGA 2079 0.4608 MGARSASVVRAPFMNVKLKLWFSLVKGNVVVFVLASILISSSWCTSAKAMYSDAEALMKFKKSLTNTVALESWDSTTNSKPPCSGNIPNWVGLFCLRDKVWGLRLENMGLTGTIDIMTLASIPALRSVSLMNNTFVGPLPSVRLLPNLKALYLSYNHFSGQIPDDEFKGLHKLRKLYLSNNEFTGQIPSSIATLPSLLILRLDSNKFQGQIPLFQHLNTTSYYPLRIINFSNNQLEGPIPPSLITFGASPFSGNPGLCGTPLKNVCQEVATPSKMRLLKILLAIVTSALIVAILVIVLVIYRLRSLTSQLQQQSSAEDHMASTLQGQGQVQVQVPPIYVKTKSLADHYDASPRQASSFQGLGRARSRRVEPGKLIFLRPQEPMFDLQDLLRSSAEILGSAGFGSSYKAVILDGYPVVVKRYKHMNNLPRDEFHEHMRRLANLNHPNLLPLLAYYYKREEKLLLSAFVHNGCLASHLHGNHNSQKLGLDWPTRLKIVKGIARGLAYLYSALPSVIVPHGHLKSSNVLLDESFEPLLTDYALSPVINLDHAQKVILPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYLTLRHNTDSDIASWVNTMITEKRTSDMFDVEMGGIGNCKAELLKLLKIGLSCCEENVERRLDIKEALEQIEELKESENDAINGEYSSTLITTERNTYRDV 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00017 692 Pfam Leucine rich repeat N-terminal domain 52 95 IPR013210 -
Vimu4g00017 692 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 39 670 IPR046959 -
Vimu4g00017 692 Pfam Leucine rich repeat 146 207 IPR001611 GO:0005515
Vimu4g00017 692 Gene3D Transferase(Phosphotransferase) domain 1 467 687 - -
Vimu4g00017 692 ProSiteProfiles Protein kinase domain profile. 391 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00017 692 Coils Coil 648 675 - -
Vimu4g00017 692 FunFam Nuclear pore complex protein NUP107 50 213 - -
Vimu4g00017 692 SUPERFAMILY L domain-like 53 262 - -
Vimu4g00017 692 FunFam Pollen receptor-like kinase 1 467 676 - -
Vimu4g00017 692 Gene3D Phosphorylase Kinase; domain 1 374 466 - -
Vimu4g00017 692 SUPERFAMILY Protein kinase-like (PK-like) 394 667 IPR011009 -
Vimu4g00017 692 Pfam Protein tyrosine and serine/threonine kinase 395 660 IPR001245 GO:0004672|GO:0006468
Vimu4g00017 692 Gene3D Ribonuclease Inhibitor 50 266 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00017 Vimu-Chr4 100689 103212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00017 52 683 Receptor kinase-like Gene Family AT5G35390 47.589 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu4g00017 PK_Tyr_Ser-Thr 6.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00017 - - pvu:PHAVU_005G185800g 1096.65