Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00015 ATGAAATCACAGGCACAGTTTCCAGAAAAGATATCAGGGCAGGTACCTAATCAATCTGGGTCTCAGTTGCCTGGCCTGATTCAGCTGAATGGAAATGCCCTGCATCAGATGCCAAATTTAGGTGTTTTTCCAAATATGGACGCTGAATTTCTCAGAGCACGATCTCTTACGCTTGAAAGAATATGTAATAAATTACTGCTTAAGTACCAGCATCCTGTTACAGAAGCACATAAAAGGAAGGTTAAGGATCTTGCAAAACGTCTCGAGGAGGGCCTGTTAAAAGCTGCTATATCTAAGGAGGACTACATGAACTTAGACACACTAGACAGTCGCTTATCTAATTTCCTTAGAATGTCATCTATGACTACTAACCACCAACAACATCCTCAGCTTGTTAGCTCTTCTCCAATTGCTACAATGATACCAACACCTGGCATGTCACATATTACAAATTCCACCATGATCACGGCATCTTCTGTGGATACGTCAATGATTGCTGCCAGTGGATCTAACAGCATAGCATCCCCATCTGTCAATAGTGTAAACATGTTACCAGCAGGTGGCATGCTTGGCAGCACCTTAAATAGATCTGATGGTTTGTCTAATGGTTACAAGCACTCTGCTACAAGTTTTTCCATTGGTTCAGGAGGAAATATGTCATCCGTTGGGGTCCAAAGAGTTACTAGTCAGATGATTCCAACTCCAGGATTTAGTGTCAGCAATAATCATTCATATACAAATATGGATCCTTCAAGTAACAACAGTTCTTTTTCCGGTGTTGATTCTACATTACTATTGCCATCACAGTCTCAGCCACAGCGGCACCAGAAGCTGCAAGATAGTGACCACAACAATCATGCATTGCACAACCTTGGCAGTCAAATTGATGGTGGAAGGAGATCTGATTTACTGCAAAACACATTTGCATATCCAAATGGTTCTATCAATAGTGGGCTAGGTTTGATTGGAAACAGCATACAAATTGCAAATGAACTCGGGACTGAAGACTACACTTCAGCATACTCTAATTCCCCTAAGAACTTACAGCAGCTATTTGATCAAAATCAACAACCAGTAGTGCAGGGATCGAGTGTTGGACATATACCTGAATTAGACTTTGAGGGACGGAAAGATATTTTGTTCTCTGTACCAATTTTGGATCTCATGCAAAGGGTAACAATCATTTTTTCAGGTGACAAATATGGATTGATTAATGCTGACACTTTTAATTCTGGAAGCTTTTATGCATCTGCAACATCCTCTGGCTCTATGTTGAACACTCAGAACATGAATGCTGTAAAATTGCCCTCAATACCCATTTCCAGCTCACTCATAAGTGGTCATTCGAATTTGCACAGTATGAATCATACTGCTCATCACAACTCTCAAGCAATAAGTTCATTAAAAAATTTAAAATTCCAGTCTTCCCTGACTTCAAGAAATGACCGTTTAAATACTCAACATCAATATGAGCAAAGAACCCAACAATGTCACCAGTCAGATTGGTATGCTCCACAGCAATTTCAGCTGAATCAGCAAAGTCAGCAACCTCAGCATTTGGTCAACAATGATGCCTTCCCTCAGTCTCAACTCTCTTCCGGTCTAGACAATAACATAAAGTCTGAGCCTGGTGTTGAACCACATAAAGAAATTTTCACTTCTCAGCTTTCTGAGCAGTTCCATACATCTGAAATGCACAACCATTTCCAACAGATTCCTTCTAAAGACTGCTCTAAGGTTGCTCAGCAGCAGGTTTCATTGGATCAGCACAACTCATCCTCATCACCACCTCAAATTTCTCAAGAAATGTTGCATCCTTATCAACTGGTTTCAGAGTCTCAAAATAATTTTAACTGCCTTTCAGTTGGGTCACAATCTAAATCCATACTTAAAAATCAGTGGCCTCGACCACAAGATGAAAATGATGTTCCTAAGGGTATGTTACATGAACAACATCTTCCCATTGATTTTCATCAAAGAATACCAAGGCAAGATGAAACCCAATGCTGTAATTTACCATTAGATGGATCTATTATTGGTCAAGCTGTTGCCTCTAGAAGCTCAGTTGAGCTGCTAGACCCAATCAATTCTAAAGAGAAGGAACACAGAAATCAACAAAAGTGGCTTTTATTTTTGTTTCATGCTCGATGCTGTTCTGCCCCAGAAGGGCGATGCCAAGAACGCCATTGTTCTGTTATGCAGAAGTTATGTAATCATGTAGATAGATGCATTATATCTCATTGTCCATATCCTCGTTGTGGTCGTACCAGGAAATTGCTTCATCATTACATCAAATGCAGGAATCCACATTGCCCTGTTTGCATTTTAGTAAGGAAGTATAGACATGCATTTCAACTTAAGTCACGAGTTCAGTCAGATCTTGAACCATGTTTGCCAGTTGCTTTAAATGAATCCAGCGAAACCTTTAATGCAGTGGGCCTTTCATCTAGATTGATCTCCAAGTCTCAACTAGTGGTTGAAATTTCAGAAGACCTACCAGCTCCAAAGCGTATGAAAACTGAGCAATACACCCAATCCACTAATCCTGAATATGATAGCGCTGCCTCATCTGCTCTTCCAAACTGTGAATTACGAGATTCAAAGGATACTCAATGCCAGTCCTACTCATGTGGGGATATGTCTGTATCAATTAAATCTGAGCTTAATGAAGTTAAAGCAGAAGTTCTGGCGCATTCAATGCATGAAAATCTCAGCGAGACAAGAATGGAGGAGGATAATGCACATGACAAAAGGCCCACTGCTAAGCCTGTCACATACAATGAGCCTGCTAATATAGCTAGGCTGGAGAATATTAGAACTGAGAAAGAAAGTGGTCAAGATAAGCAAGAAAATGTGACCCAGCCATCTGAACCTGGAGCTGCAACCAAGTCTGGTAAGCCAAAAATAAAGGGAGTCTCATTGACAGAGCTGTTTACTCCTGAGCAAGTCAGAGAACATATCACTGGCCTCAGGCAATGGGTTGGCCAAAGCAAATCAAAGGCAGAGAAGAATCAAGCAATGGAGCATTCGATGAGTGAGAACTCCTGTCAGTTGTGTGCAGTAGAGAAATTAACTTTTGAACCACCCCCTATTTATTGCACAACATGTGGTGTTCGGATTAAACGCAATAATATGTATTATACAATGGGTACTGGTGATACACGACACTATTTTTGTATACCATGCTACAATGAGCCTCGTGGAGACACCATTGTTGTTGATGGAACTTCTTTTCCTAAGTCAAGGTTAGAAAAGAAGAAAAATGATGAGGAAACAGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCATGGCAACATCAAATTTGTGCCTTATTTAATGGTCGAAGAAATGATGGTGGACAAGCTGAATATACATGCCCTAACTGCTATATTCAAGAAGTAGAAAGAGGTGAGCGCAAGCCCTTACCCCAAAATGCTGTTCTTGGAGCCAAGGATTTACCCAGAACAATTCTCAAAACTCCTTCACCTGCTTCTAGTGACATCTCTATGCCTCCGAGATGCCCCACTGCATCTGGCACTATGCTTCACATTTCTGACAACGTATCAGCATTCAACACCATAAATTCAAAGACTGACCCCTTTCTTATTTTAGATGATGTGAGTCTTCTTATTGCAACGGCAGATACAAATCCTTTCTGGAATGGGATGCCAAAGGAAAGGAAGAAAAAGCTTACTGCTGCTGCAGAAATCACCTTCGGCAGGGGCAAATGGTGGCCTGTGCCTGGAGCTGAATCTCTTGTTATAAGGGTTGTGTCCTCTGTTGACAAGAAGTTAGAAGTTAAACAGCGGTTTTTGGAGATTTTTCAGGAAGAAAATTACCCAACAGAATTCCCATATAAATCAAAGGTAGTTTTGTTGTTTCAGAAGATTGAAGGGGTGGAAGTATGCCTCTTTGGCATGTATGTTCAAGAGTTTGGATCTGAAAGTAAATTTCCAAATCAGCGCCGGGTTTATCTTTCATATCTGGACTCTGTTAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACAGGAGAAGCTCTTCGAACATTTGTTTATCATGAAATTCTGATTGGATACCTTGAGTATTGCAAGAAACGTGGTTTCACTAGCTGCTACATTTGGGCTTGTCCGCCACTAAAGGGTGAAGATTATATTTTATATTGTCATCCAGAAATTCAGAAAACACCAAAATCTGATAAGCTTAGGGAATGGTACCTTGCTATGTTAAGAAAAGCTGCCAAGGAGAATATTGTGGTTGATCTCACCAACTTGTACGACCATTTCTTTGTATCTTCTGGTGAATGTAGGGCGAAGGTTACAGCTGCAAGGCTCCCATATTTTGATGGTGACTATTGGCCTGGGGCGGCCGAGGATTTGATTCATCAGCTTCGCCAAGAGGAAGATGGAAGAAAACAAAATAAGAAAGGAACAACTAAGAAGACTATAACAAAAAGGGCTTTAAAAGCATCTGGTCAGTCAGATCTTTCTGGAAATGCCACAAAGGATCTTCTCCTGATGCACAAACTTGGCGAAACCATTTCCCCAATGAAGGAAGATTTTATCATGGTTCACTTGCAGCATGCATGCAGTCATTGTTGTATTCTGATGGTGTCAGGCAACCGTTGGGTTTGCAGGCAATGCAAGAACTTTCAGATTTGTGACAAGTGTTATGAAGCAGAACTAAAGCGTGAAGAAAGAGAGCGGCATCCTATTAACCAGAGGGAGAAACACATCCTTTATCCTGTGGAAATTATTGATGTACCTGCCGATACAAAGGACAAAGATGAGATTCTTGAGAGTGAGTTCTTTGACACTAGGCAGGCATTTCTGAGTCTCTGTCAGGGAAATCATTATCAGTATGATACTCTAAGGCGGGCCAAGCATTCCTCTATGATGGTTCTCTATCATCTTCATAATCCAACTGCTCCTGCATTTGTTACTACATGTAATATTTGCCGTCTTGACATAGAAACAGGCCAAGGTTGGCGTTGTGAAGTCTGCCCTGAATACGATGTGTGCAATGCTTGCTATCAAAAGGATGGTGGCACTGATCATCCTCATAAATTGACAAATCATCCATCAATGGCAGATCGTGATGCTCAGAACAAGGAAGCTAGGCAACAACGAGTATTACAGTTACGAAGAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCCCATTGCCAATATCCAAATTGTCGGAAGGTGAAGGGGCTTTTCCGTCATGGGATGCATTGCAAAACACGTGCCTCTGGAGGTTGCGTTCTATGTAAGAAAATGTGGTATTTGCTTCAACTCCATGCTCGTGCCTGCAAAGAATCTGAATGCCATGTACCACGTTGCAGAGATTTAAAAGAACACTTGAGGAGGTTGCAGCAACAGTCTGATTCACGGCGAAGAGCAGCTGTAATGGAGATGATGAGGCAGAGAGCTGCAGAAGTTGCAAACAATTCTGGATGA 5472 0.4123 MKSQAQFPEKISGQVPNQSGSQLPGLIQLNGNALHQMPNLGVFPNMDAEFLRARSLTLERICNKLLLKYQHPVTEAHKRKVKDLAKRLEEGLLKAAISKEDYMNLDTLDSRLSNFLRMSSMTTNHQQHPQLVSSSPIATMIPTPGMSHITNSTMITASSVDTSMIAASGSNSIASPSVNSVNMLPAGGMLGSTLNRSDGLSNGYKHSATSFSIGSGGNMSSVGVQRVTSQMIPTPGFSVSNNHSYTNMDPSSNNSSFSGVDSTLLLPSQSQPQRHQKLQDSDHNNHALHNLGSQIDGGRRSDLLQNTFAYPNGSINSGLGLIGNSIQIANELGTEDYTSAYSNSPKNLQQLFDQNQQPVVQGSSVGHIPELDFEGRKDILFSVPILDLMQRVTIIFSGDKYGLINADTFNSGSFYASATSSGSMLNTQNMNAVKLPSIPISSSLISGHSNLHSMNHTAHHNSQAISSLKNLKFQSSLTSRNDRLNTQHQYEQRTQQCHQSDWYAPQQFQLNQQSQQPQHLVNNDAFPQSQLSSGLDNNIKSEPGVEPHKEIFTSQLSEQFHTSEMHNHFQQIPSKDCSKVAQQQVSLDQHNSSSSPPQISQEMLHPYQLVSESQNNFNCLSVGSQSKSILKNQWPRPQDENDVPKGMLHEQHLPIDFHQRIPRQDETQCCNLPLDGSIIGQAVASRSSVELLDPINSKEKEHRNQQKWLLFLFHARCCSAPEGRCQERHCSVMQKLCNHVDRCIISHCPYPRCGRTRKLLHHYIKCRNPHCPVCILVRKYRHAFQLKSRVQSDLEPCLPVALNESSETFNAVGLSSRLISKSQLVVEISEDLPAPKRMKTEQYTQSTNPEYDSAASSALPNCELRDSKDTQCQSYSCGDMSVSIKSELNEVKAEVLAHSMHENLSETRMEEDNAHDKRPTAKPVTYNEPANIARLENIRTEKESGQDKQENVTQPSEPGAATKSGKPKIKGVSLTELFTPEQVREHITGLRQWVGQSKSKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNEPRGDTIVVDGTSFPKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIQEVERGERKPLPQNAVLGAKDLPRTILKTPSPASSDISMPPRCPTASGTMLHISDNVSAFNTINSKTDPFLILDDVSLLIATADTNPFWNGMPKERKKKLTAAAEITFGRGKWWPVPGAESLVIRVVSSVDKKLEVKQRFLEIFQEENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSESKFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLAMLRKAAKENIVVDLTNLYDHFFVSSGECRAKVTAARLPYFDGDYWPGAAEDLIHQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNATKDLLLMHKLGETISPMKEDFIMVHLQHACSHCCILMVSGNRWVCRQCKNFQICDKCYEAELKREERERHPINQREKHILYPVEIIDVPADTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICRLDIETGQGWRCEVCPEYDVCNACYQKDGGTDHPHKLTNHPSMADRDAQNKEARQQRVLQLRRMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNSG 1823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00015 1823 Gene3D - 1644 1696 IPR043145 -
Vimu4g00015 1823 Pfam Zinc finger, ZZ type 1647 1688 IPR000433 GO:0008270
Vimu4g00015 1823 Gene3D TAZ domain 1702 1819 IPR035898 -
Vimu4g00015 1823 MobiDBLite consensus disorder prediction 839 859 - -
Vimu4g00015 1823 SUPERFAMILY FYVE/PHD zinc finger 1092 1132 IPR011011 -
Vimu4g00015 1823 PANTHER CBP/P300-RELATED 80 1814 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vimu4g00015 1823 ProSiteProfiles Zinc finger TAZ-type profile. 1705 1788 IPR000197 -
Vimu4g00015 1823 MobiDBLite consensus disorder prediction 566 599 - -
Vimu4g00015 1823 FunFam Histone acetyltransferase HAC1-like protein 1702 1819 - -
Vimu4g00015 1823 Gene3D - 1521 1578 IPR043145 -
Vimu4g00015 1823 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1083 1131 IPR013083 -
Vimu4g00015 1823 MobiDBLite consensus disorder prediction 904 922 - -
Vimu4g00015 1823 ProSiteProfiles Zinc finger ZZ-type profile. 1645 1698 IPR000433 GO:0008270
Vimu4g00015 1823 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1205 1643 IPR031162 GO:0004402
Vimu4g00015 1823 MobiDBLite consensus disorder prediction 238 275 - -
Vimu4g00015 1823 SUPERFAMILY RING/U-box 1626 1694 - -
Vimu4g00015 1823 SMART TAZ_2 699 777 IPR000197 -
Vimu4g00015 1823 SMART TAZ_2 1708 1786 IPR000197 -
Vimu4g00015 1823 Gene3D TAZ domain 693 782 IPR035898 -
Vimu4g00015 1823 SUPERFAMILY TAZ domain 698 780 IPR035898 -
Vimu4g00015 1823 ProSiteProfiles Zinc finger ZZ-type profile. 1525 1588 IPR000433 GO:0008270
Vimu4g00015 1823 CDD PHD_HAC_like 1058 1130 - -
Vimu4g00015 1823 ProSitePatterns Zinc finger ZZ-type signature. 1650 1677 IPR000433 GO:0008270
Vimu4g00015 1823 ProSitePatterns Zinc finger PHD-type signature. 1059 1130 IPR019786 -
Vimu4g00015 1823 SMART KAT11_2 1241 1537 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vimu4g00015 1823 Pfam Histone acetylation protein 1249 1469 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vimu4g00015 1823 SMART zz_5 1524 1568 IPR000433 GO:0008270
Vimu4g00015 1823 SMART zz_5 1644 1690 IPR000433 GO:0008270
Vimu4g00015 1823 MobiDBLite consensus disorder prediction 1 22 - -
Vimu4g00015 1823 MobiDBLite consensus disorder prediction 904 968 - -
Vimu4g00015 1823 SUPERFAMILY TAZ domain 1707 1790 IPR035898 -
Vimu4g00015 1823 FunFam Histone acetyltransferase of the CBP family 12 1521 1580 - -
Vimu4g00015 1823 FunFam Histone acetyltransferase HAC1 1644 1695 - -
Vimu4g00015 1823 MobiDBLite consensus disorder prediction 839 855 - -
Vimu4g00015 1823 ProSiteProfiles Zinc finger TAZ-type profile. 697 777 IPR000197 -
Vimu4g00015 1823 MobiDBLite consensus disorder prediction 1465 1495 - -
Vimu4g00015 1823 Pfam TAZ zinc finger 706 774 IPR000197 -
Vimu4g00015 1823 Pfam TAZ zinc finger 1715 1785 IPR000197 -
Vimu4g00015 1823 SUPERFAMILY RING/U-box 1505 1585 - -
Vimu4g00015 1823 Pfam PHD-finger 1089 1131 IPR019787 -
Vimu4g00015 1823 MobiDBLite consensus disorder prediction 238 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00015 Vimu-Chr4 66974 87490 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vimu4g00015 HAT_KAT11 2.1e-31 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00015 K04498 - qsu:112034234 2156.72