Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03692 ATGGCTATGATGGTGACGGAGGGCAACGACAGCTGCGGCAGCGGAGTGCAGCACCATAGGACGTCCTCCTCTTCCTCTTCGCCGGCGCAAACTCGTCAGCAGCGCCACAAGGTCGAAGTCTACAATGAGATTCTTCGTCGCTTGAAAGATTCCGGCCACGAAGAGGCTATGCAACCTGGCTTCAACGATCAGCTTTGGGCTCACTTCAATCGTCTTCCCACACGGTCCTCTCCTTGCATTCTCTATTCTCTTCTACAAATACTCGCTGCAAACTACGTTAATTCTTCTTTTACCATTCTCATACGTGTTTCATTTGTATCTTTATTAGAATTAACCTTTCCTGCTTGTCCTGAATCCGTACGTACGGGAGACACTAGGTACGCGCTGGATGTGAATGTGGAAAGGGCGGCTGATGTTCTTATGCACAAGAGATTATTGCAGTTGGCACATGATCCTGCTAATAGGCCTTCAATTGCAGTTAGATTAGTTCAGGTTCATCCCATATCTGATGGAAACTCAGCTGATGCTTCTGAATTGGATGATCCTGGGACAGAATCTGGTCAAAGTTCTTCAAAGTACTCTAGCAGACAGAGTATACATCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCATTGGCTCTTGAAGCAAATAGTTCCGAAGACATAGAGGAGGAACAATCTGTACATGCCAATGTTCAATATTCACGACCCATGCATGAAATCACCATCTCAACAGATGACAAGCCAAAGCTTCTTAGCCAGTTAACTGCTCTGCTTGCTGAGATTGGACTGAACATCCAAGAAGCACACGCCTTTTCCACAACTGATGGTTACTCATTAGATGTGTTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAAAAGCTGAAAGCAGCTTTGGAAAGAGAAGTCTTGAAGAAGATTGAGAGACAGGTGAGGTCCAGTCCGCAATCTGTATCTTCTGTTGATGAGCCTGATCAACCAAAGATGAAAACTGAACTGGATCATTTGACAATACCAAATGATGGGACAGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGCATCTGGGTCATATGGTGAACTATTTAAAGGTGTATACTGTAGCCAGGAAGTAGCGATCAAAGTTCTCAAGCCTGAACATGTAAATTCAGAATTGCAGAAAGAGTTTGCACAAGAAGTCTACATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATAGGAGCATGTACCAAACCCCCACGTTTATGCATAGTGACAGAATTTATGTCAGGTGGAAGTGTGTATGACTACCTACATAAGCAGAGGGGCTTTTTTAAATTTCCTACTCTGCTTAAAGTCGCAATTGATATTTCTAAAGGGATGAACTACTTGCACCAACATAACATAATCCATAGAGACTTGAAGGCTGCCAACCTTTTGATGGACGAAAACTGTGTTGTAAAGGTTGCTGATTTTGGGGTTGCTAGAGTTAAAGCTCAGTCTGGTGTTATGACAGCAGAAACTGGAACATATAGATGGATGGCTCCTGAGGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAATTGCTCACTGGAAAGCTTCCATACGAATATTTAACCCCCCTTCAGGCAGCTATAGGAGTGGTTCAAAAGGGATTGCGACCCACCATCCCCAAGAACACTCATCCAAAATTTGTTGAACTTCTTGAGAGATCCTGGCAGCAAGATCCAACATTGAGACCCGACTTCTCTGAAATTATTGACATCCTGCAGCAATTGGTGAAGGAGGTTGGAGATGGAGAGGACCGGCACAAAGAAAAATCTGGAGGACTTCTGTCAGTCCTGAGACGAGGACATCACTAA 1908 0.4345 MAMMVTEGNDSCGSGVQHHRTSSSSSSPAQTRQQRHKVEVYNEILRRLKDSGHEEAMQPGFNDQLWAHFNRLPTRSSPCILYSLLQILAANYVNSSFTILIRVSFVSLLELTFPACPESVRTGDTRYALDVNVERAADVLMHKRLLQLAHDPANRPSIAVRLVQVHPISDGNSADASELDDPGTESGQSSSKYSSRQSIHPPPAFGSSPNLEALALEANSSEDIEEEQSVHANVQYSRPMHEITISTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKAALEREVLKKIERQVRSSPQSVSSVDEPDQPKMKTELDHLTIPNDGTDVWEIDPKHLKYGTQIASGSYGELFKGVYCSQEVAIKVLKPEHVNSELQKEFAQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKQRGFFKFPTLLKVAIDISKGMNYLHQHNIIHRDLKAANLLMDENCVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVELLERSWQQDPTLRPDFSEIIDILQQLVKEVGDGEDRHKEKSGGLLSVLRRGHH 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03692 635 CDD STKc_MAP3K-like 362 605 - -
Vimu3g03692 635 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 31 610 - -
Vimu3g03692 635 Gene3D Transferase(Phosphotransferase) domain 1 435 625 - -
Vimu3g03692 635 MobiDBLite consensus disorder prediction 10 35 - -
Vimu3g03692 635 ProSiteProfiles ACT domain profile. 242 323 IPR002912 -
Vimu3g03692 635 SUPERFAMILY Protein kinase-like (PK-like) 340 605 IPR011009 -
Vimu3g03692 635 SUPERFAMILY ACT-like 240 304 IPR045865 -
Vimu3g03692 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Vimu3g03692 635 MobiDBLite consensus disorder prediction 614 635 - -
Vimu3g03692 635 MobiDBLite consensus disorder prediction 1 36 - -
Vimu3g03692 635 FunFam serine/threonine-protein kinase HT1 435 625 - -
Vimu3g03692 635 CDD ACT_TyrKc 240 307 - -
Vimu3g03692 635 Gene3D - 239 313 - -
Vimu3g03692 635 MobiDBLite consensus disorder prediction 171 209 - -
Vimu3g03692 635 MobiDBLite consensus disorder prediction 614 628 - -
Vimu3g03692 635 PRINTS Tyrosine kinase catalytic domain signature 513 523 IPR001245 GO:0004672|GO:0006468
Vimu3g03692 635 PRINTS Tyrosine kinase catalytic domain signature 430 443 IPR001245 GO:0004672|GO:0006468
Vimu3g03692 635 PRINTS Tyrosine kinase catalytic domain signature 467 485 IPR001245 GO:0004672|GO:0006468
Vimu3g03692 635 PRINTS Tyrosine kinase catalytic domain signature 532 554 IPR001245 GO:0004672|GO:0006468
Vimu3g03692 635 PRINTS Tyrosine kinase catalytic domain signature 576 598 IPR001245 GO:0004672|GO:0006468
Vimu3g03692 635 Gene3D Phosphorylase Kinase; domain 1 346 434 - -
Vimu3g03692 635 SMART serkin_6 356 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03692 635 ProSiteProfiles Protein kinase domain profile. 356 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03692 635 MobiDBLite consensus disorder prediction 182 204 - -
Vimu3g03692 635 Pfam Protein tyrosine and serine/threonine kinase 356 604 IPR001245 GO:0004672|GO:0006468
Vimu3g03692 635 Coils Coil 292 312 - -
Vimu3g03692 635 FunFam Serine/threonine-protein kinase isoform 1 346 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03692 Vimu-Chr3 49458721 49470190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03692 7 634 MAP Kinase Kinase Kinase AT4G35780 58.758 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu3g03692 PK_Tyr_Ser-Thr 7.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03692 - - gmx:100805180 1060.06