Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03691 ATGCAATCTATCAGGAAGTCATTCAAATCTTATGGTTCCTTCACACAAACAAAAAGGTTTTCCGCCGCCGGAAACCCCGATTCTGACCACGAGCAGCTCCCCATTCTCCTCGACCAAGAAACGCACCGCCACAACGCAATGCCAGCCGGCGACTACGTCGTCAAAATCGACGATGCCGCCAATCCTTCCCATGCCAACAAGATTTGGCGCGACTCAAGCTACGACTCCTGGAGGGGCGAAGGCTCGTCCTCCGCCGCCGGTGACCAGAGTTTTAATTTCCGGCAGACGGAGGACCCGCCGTCGCAGCTGATAGGGCGGTTCCTCCACAAGCAGCGGGCCTCCGGCGAGATGCAGCTGGACATGGATTTGGAAATGGAGGAGCTCCAGGACGATGCCGGCGAAGGAATGTTGACGCCGGTGGAGGAGTCTCCGGTGAACCATCGCAATTCCAGGGAGCTGAAGGTCTCCTTCGATGAACCCCTTTCCGATTCGAATCTCCTCGAACAGCAGAACGACCCCTTCAGAAGAAGGCACAATAGAGAATCGCCGACGGTTGAGGAGTCTCCGGTGAACTTTCGCAATTCCAGGGAGCTGAAGGTCTCCTTCGATGAACCCCTTCCCAATTCGAATCTATTCGAACAGCAGAACGACACCTTCAGAAGAAGGCACAGCAAGGAATCGTCCACCATCGCGGACTTCCAACGCCCTCCTCACCCGCCGCAGTACGACCATCGTCGCTCGCCATCGCCGTCGCCTGTTGACGATGGCGAGGTCCTTCGGTGCACCTCGAACGCTTCCTTCGAGAGAAACCTCTCCATGCAGAGAAAATCTGCGTTGTTGAAGGCCAAAACGAGATCCAGGTTGCTGGCCCCGCCAGACGAATCCGATAGAAAATCGAGTCGGGTCATGAAATCGGGCCAGCTCCAGTCCGGGTTTTTAGGGAGGAGGGGTGATGAGGAGGAGGACGATCCGTTTTTGGAAGAGGATCTTCCTGATGAGTTTAAGAAGACTCATTTCAGCTTCTGGATTCTTCTGGAGTGGGTGAGTTTGATTTTGATCATTGGGTTTTTGATAACCACCCTTTGCATTCCCTTCCTGAGGGAGATGAATCTGTGGCATCTTAAATTGTGGAAATGGGAGGTTATGGTTCTGGTTTTGATCTGTGGGAGATTGGTTTCTGATTGGGTCATTAGAATTGCTGTGTACTGCATTGAGAGGAACTTCCTCTTGAGGAAGAGAGTGTTGTATTTTGTGTACGGTGTGAAGAAAGCAGTTCAGAATTGTGTTTGGTTGGGGCTCGTGTTGATTGCATGGCATTTGTTGTTTGACCAGAGGGTGCAGAGAGAGACCCACAGTAATTTCCTTGAGTATGTTAACAAGGTTTTGGTGTGTTTCCTTGTGGGGACTTTGGTGTGGTTGCTCAAGACTCTCATGGTTAAGGTGTTGGCCTCTTCTTTCCATGTGAGTACCTACTTTGATAGGATTCAGGAGTCACTATTTAATCAGTATGTGATTGAGACGCTTTCGGGGCCTCCATTGGTGGAGATTCGGAAGGCTGAAGAGGAGGAGGAGAGGCTTGCTGATGAGGTCCAGCAGCTGCAGAATGCTGGGGTTACCATACCCCCTGACCTTAAGGCAACTGCTTTTTCTGATATCAAGAGTGCCAGGTCCAGGAGTGGAGTGCTCAAGAGCCCCAGAACTAAGAGCGCCAAGTTTTCGCGCCCTCTTTCCAAGGGCTCTGACGATGGTGATGTCATCACCATTGATAACCTCAACAAGCTCAACCCCAACAATATCTCTGCCTGGAATATGAAAAGGTTGATGAACATGGTCCGGCATGGGGCTCTTAGCACCTTGGATGAACAGATACTTGATAGCGCCAATGAAGATGAGTACGCCACGCAGATCAGAAGTGAAAACGAGGCAAAAGTTGCTGCTAAGAAAATATTTCAAAATGTTGCTAGGCGTGGGTGCAGGTATATATACCCGGATGACTTGATGCGATTTATGCAAGAAGACGAAGCTGCAAAAACCATGAATCTCTTCGAAGGAGCAGCTGATTCTGGGAGAATAAGCAAAGCTGCTTTGAAGAACTGGGTGGTCAATGCCTTCAGGGAAAGGAGAGCGCTCGCATTGACACTAAATGACACAAAAACGGCAGTGAACAAACTTCATCGAATGCTCAATTTTATAGTCGGAATTGTTGTACTGATTATTTGGCTCTTGATATTGGAACTTGCCACCACCAAATTTCTTGTCTTTTTGAGTTCACAGATTGTCTTGGTTACATTTATATTTGGAAACACCTGCAAGACCATATTTGAGGCAATTGTTTTCCTATTTGTCATGCACCCATTTGACGTGGGAGATAGATGTGAAATTGATGGGATTCAGACACGTCCTAATTTCTCCCCCATGCTTGCTTACCAATTTCAGATGATCGTAGAAGAAATGAACATATTGACAACTATATTTCTGAAATACGATAATCATAAGGTGATCATCCCTAACAGTGTCCTTGCTACCAAGGCTATATTTAACTATTACCGGAGTCCTGACATGCAAGATATTATCGAATTCTACATACATGTATGCACCCCAGTTGAAAAGATTTCACTTATAAAACACAGAATAACCAGTTTCTGTGAAAGCAAGAAGGAGCACTGGTATCCTTCACCTACTGTAGTAGTCAGGGATCATATAGACATACACATGGTGAAAATGGCTATCTGGCCCAGTCATAGAATGAACTTCCAAGATCAGACAGAAAGGCATATCAGGAGATCCATGTTGCTTGAAGAGTTGATTAAGATTTTCAGGGAACTCGACCTTAATTACCGCCTCTTGCCGCTGGATGTTAACGTCAGAGCCGTGCCTACCTCCTCTGAACGGCTTCCACCTAGTTGGCAATCGATTCCAAGCTGA 2925 0.4786 MQSIRKSFKSYGSFTQTKRFSAAGNPDSDHEQLPILLDQETHRHNAMPAGDYVVKIDDAANPSHANKIWRDSSYDSWRGEGSSSAAGDQSFNFRQTEDPPSQLIGRFLHKQRASGEMQLDMDLEMEELQDDAGEGMLTPVEESPVNHRNSRELKVSFDEPLSDSNLLEQQNDPFRRRHNRESPTVEESPVNFRNSRELKVSFDEPLPNSNLFEQQNDTFRRRHSKESSTIADFQRPPHPPQYDHRRSPSPSPVDDGEVLRCTSNASFERNLSMQRKSALLKAKTRSRLLAPPDESDRKSSRVMKSGQLQSGFLGRRGDEEEDDPFLEEDLPDEFKKTHFSFWILLEWVSLILIIGFLITTLCIPFLREMNLWHLKLWKWEVMVLVLICGRLVSDWVIRIAVYCIERNFLLRKRVLYFVYGVKKAVQNCVWLGLVLIAWHLLFDQRVQRETHSNFLEYVNKVLVCFLVGTLVWLLKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEIRKAEEEEERLADEVQQLQNAGVTIPPDLKATAFSDIKSARSRSGVLKSPRTKSAKFSRPLSKGSDDGDVITIDNLNKLNPNNISAWNMKRLMNMVRHGALSTLDEQILDSANEDEYATQIRSENEAKVAAKKIFQNVARRGCRYIYPDDLMRFMQEDEAAKTMNLFEGAADSGRISKAALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFIVGIVVLIIWLLILELATTKFLVFLSSQIVLVTFIFGNTCKTIFEAIVFLFVMHPFDVGDRCEIDGIQTRPNFSPMLAYQFQMIVEEMNILTTIFLKYDNHKVIIPNSVLATKAIFNYYRSPDMQDIIEFYIHVCTPVEKISLIKHRITSFCESKKEHWYPSPTVVVRDHIDIHMVKMAIWPSHRMNFQDQTERHIRRSMLLEELIKIFRELDLNYRLLPLDVNVRAVPTSSERLPPSWQSIPS 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03691 974 Pfam Mechanosensitive ion channel 727 905 IPR006685 GO:0016020|GO:0055085
Vimu3g03691 974 Coils Coil 513 539 - -
Vimu3g03691 974 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 170 969 IPR016688 -
Vimu3g03691 974 MobiDBLite consensus disorder prediction 560 574 - -
Vimu3g03691 974 MobiDBLite consensus disorder prediction 73 99 - -
Vimu3g03691 974 MobiDBLite consensus disorder prediction 170 184 - -
Vimu3g03691 974 MobiDBLite consensus disorder prediction 155 258 - -
Vimu3g03691 974 SUPERFAMILY Sm-like ribonucleoproteins 775 848 IPR010920 -
Vimu3g03691 974 MobiDBLite consensus disorder prediction 559 579 - -
Vimu3g03691 974 MobiDBLite consensus disorder prediction 73 102 - -
Vimu3g03691 974 PIRSF Memb_At2g17000 37 974 IPR016688 -
Vimu3g03691 974 Gene3D - 785 848 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03691 Vimu-Chr3 49448840 49452566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03691 51 969 Mechanosensitive Ion Channel Family AT1G53470 49.843 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03691 K22048 - gmx:100789882 1428.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03691 3 49448840 49452566 Vimu3g03691 3 49448840 49452566 ECH