Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03672 ATGGGCGTGGCTCAGAATGTTCACGACACGGAGGAGGGTACCTTGGAGATTGGAATGGAATACAGAACTGTATCAGGAGTTGCTGGACCACTGGTTATTCTTGACAAAGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGATGGAACTACTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAGGCTGTTGTTCAGGTATTTGAAGGTACATCTGGGATTGACAATAAATTTACAACAGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTCTCTTTGGATATGCTTGGGCGCATATTTAATGGCTCTGGAAAACCAATTGATAACGGTCCACCAATTTTACCTGAGGCATACCTAGATATTTCTGGAAGTTCTATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTTTATTCTCAGCAGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGTCGTCAGGCTGGCTTAGTCAAGCGACTTGAGAAATCTGATAATCTACTTGAGCATGCTATGCAGAGTGGAGAAGAGGACAATTTTGCTATTGTTTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGGTCAATGGAGAGAGTGACTCTTTTCCTTAATTTGGCAAACGATCCTACAATTGAGCGAATTATCACTCCTCGTATTGCTCTCACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCACGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGATACATGTATACAGATCTTGCAACAATTTATGAACGTGCTGGAAGAATTGAGGGGCGTAAAGGCTCTATTACTCAAATTCCAATTTTAACCATGCCCAACGATGATATTACGCACCCAACTCCTGATCTGACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAACAGACAGATATACCCACCAATCAATGTCCTCCCATCACTATCTCGGTTGATGAAGAGTGCTATTGGTGAGGGAATGACCAGAAGGGATCATGCTGATGTTTCCAACCAGCTCTATGCAAATTATGCTATTGGAAAGGATGTTCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCAGAGGACCTGCTTTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAGCTTACGACACCCGTAATATATTCCAGTCGCTAGATCTTGCATGGACCTTACTCAGGATTTTCCCTCGTGAACTTCTTCATCGTATACCAGCCAAGACTCTTGACCAGTATTACAGCCGAGATGCTGGTAATTGA 1479 0.428 MGVAQNVHDTEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEHAMQSGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAGN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03672 492 NCBIfam V-type ATPase subunit B 20 490 IPR005723 GO:0033180|GO:0046961|GO:1902600
Vimu3g03672 492 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Vimu3g03672 492 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Vimu3g03672 492 ProSitePatterns ATP synthase alpha and beta subunits signature. 372 381 IPR020003 GO:0005524
Vimu3g03672 492 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 5 489 IPR022879 -
Vimu3g03672 492 CDD V_A-ATPase_B 92 389 - -
Vimu3g03672 492 Hamap V-type ATP synthase beta chain [atpB]. 18 490 IPR022879 -
Vimu3g03672 492 CDD ATP-synt_V_A-type_beta_C 391 485 - -
Vimu3g03672 492 PIRSF V-ATPsynth_beta/V-ATPase_B 11 492 IPR022879 -
Vimu3g03672 492 FunFam V-type proton ATPase subunit B, brain 29 492 - -
Vimu3g03672 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 387 IPR027417 -
Vimu3g03672 492 Gene3D - 29 491 - -
Vimu3g03672 492 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 381 IPR000194 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03672 Vimu-Chr3 49342671 49347895 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03672 1 492 Primary Pumps ATPases(2) AT4G38510 95.528 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03672 K02147 - gmx:100814088 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03672 3 49342671 49347895 Vimu3g03672 3 49342671 49347895 ECH