Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03667 ATGGATTTTGACGAGTATGAGTATTTAGAGAAAGCAGTTGAAAATGCTGAAGTTAAGAAGGAGAAGCATAGGGCTAATGGTAGTGATAGAAGTGTGAAGTCTGAAGAGAGAGGGCATGGTCGGAGTACTAAGCATAAGAGTGGTGAGAAGGATGACGACGACGTTGAATTCCATTCCAGGCATTCAAAATCTGGAGATGATTCCCGCCATTACGAGAGGAAGAGAGAAAGAGGCTCCTCTCGGCACGGTTTGCAGTACAGAGATGGAGTGAAGGAAAAAGATCAGCACAGAAGCTCTGGGGGCAGTAGGGATAGGAAGAGGGATAGAGACAGAGACCATGAGAACAAGGATGGGAAGAGAGGTAGGGAGAGAGAGAGAGATCGCGAGCGCGACCAAGAAAGGGATAGAAGGGACCGAGGAAGTGAGAGTGAACAGGAACACCGCAGCAGAAGTAGATCCGAAAGGCATCGGAGTGATCCGGATGACAGAGACAGAGAAACAATTCTTGATAAAGACAGAGAAATAAGCCGGGATAAGGATTTCAGAGACAGAGAAAGGGTGAGGGAAACAAGGGAACGGGTTAGAGAAAGCAGGTCATCAAATGATCTTTGCCGAGGTACTGGAGCCTTAGGTCATTGGTTTCGAAAGTTTTCCCCTCCCGGAATCTATTTGAAAATATGCATTGCAACCATTCATTGTTTGAATGGTTGTTGTAGTGGCGGTGATGCCATGCTGCGACATAAAGAGAAAAAGGAAGAAGCAACACAACCTGATCCTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCCTATCAGATTTCTCTGAAAGCTGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTACGGGATGTTCGCTTGATTATGGACCGGAATTCAAGGCGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGCCATGTCTGTCCCAATGGCAATAGCTCTTTCAGGCCAACCTGTCCTAGGTCAACCAGTGATGGTGAAGCCGTCAGAAGCAGAAAAGAATTTGGTTCAGACCACAACATCTGTTGCTGGTGGATCCACTGGACTTATAGGTCCGTATTCTGGGGGAGCAAGAAGGCTCTATGTCGGAAATCTGCATATCAGTATGAGTGAAGCTGATATTCGTAAGGTATTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTCGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTACAGGTGAATTTTGTATCTAGTACCAATAATTGGGCAATTGCTCACTCTACATGGAAACTTTTAATGAATTTAAACCAAGGTAGAACCTCTCTATGGACCCACTGGAGTCATGATCTACTCGTGAATGAAGTTGCTACTGGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTCGAACAATCAAGGTATCGGCTGTTACTGATCAATTAGGAATGCAAGAGGCTGGAGGAAATACTGGTGATTTTGATGATGATGATGAAGGAGGTGGCTTGTCCTTGAATGCATGTTCTCGAGCAATACTAATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTGGGTAATTCTGTTGTCAACAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTTGCAGCTGTGCCCGCGGGTTCTCCCCTTTCTTCTATTCCTGCAGTATCTGGGTTGTCTGGTGGAGGTCTCCAAATTCCCATGGCTACAATTCCTACTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAACATGTTTGATCCCAAGGATGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTCGAAGCAGAATGCTCTAAGTTTGGGACGTTAAAACATATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGTTTTGAAGATACCCAATCTGCAATAAGTGCTCAGCGGTCCTTGCACGGACGATGGTTTGCTGGGAAGATGATCACAGCGAGCTTCATGGTGCCTCAGTCATACGAAGATAAATTCCCAGACAGCAGATAA 2070 0.4469 MDFDEYEYLEKAVENAEVKKEKHRANGSDRSVKSEERGHGRSTKHKSGEKDDDDVEFHSRHSKSGDDSRHYERKRERGSSRHGLQYRDGVKEKDQHRSSGGSRDRKRDRDRDHENKDGKRGRERERDRERDQERDRRDRGSESEQEHRSRSRSERHRSDPDDRDRETILDKDREISRDKDFRDRERVRETRERVRESRSSNDLCRGTGALGHWFRKFSPPGIYLKICIATIHCLNGCCSGGDAMLRHKEKKEEATQPDPDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPVLGQPVMVKPSEAEKNLVQTTTSVAGGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQVNFVSSTNNWAIAHSTWKLLMNLNQGRTSLWTHWSHDLLVNEVATGNAQSLNGQLEIGGRTIKVSAVTDQLGMQEAGGNTGDFDDDDEGGGLSLNACSRAILMQKLDRSGTASSMVGSLGNSVVNNTGLNLPATGNILAAVPAGSPLSSIPAVSGLSGGGLQIPMATIPTIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKKSAGFVYLRFEDTQSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFPDSR 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03667 689 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 501 613 IPR029123 -
Vimu3g03667 689 Gene3D - 239 351 IPR012677 -
Vimu3g03667 689 Gene3D - 365 510 IPR012677 -
Vimu3g03667 689 NCBIfam splicing factor, CC1-like family 246 418 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vimu3g03667 689 Gene3D - 590 689 IPR012677 -
Vimu3g03667 689 CDD RRM3_RBM39_like 594 676 - -
Vimu3g03667 689 MobiDBLite consensus disorder prediction 14 200 - -
Vimu3g03667 689 MobiDBLite consensus disorder prediction 14 202 - -
Vimu3g03667 689 FunFam Splicing factor, CC1-like protein 590 689 - -
Vimu3g03667 689 SUPERFAMILY RNA-binding domain, RBD 591 675 IPR035979 GO:0003676
Vimu3g03667 689 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 595 678 IPR000504 GO:0003723
Vimu3g03667 689 FunFam RNA-binding protein 39 isoform X1 259 351 - -
Vimu3g03667 689 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 370 485 IPR000504 GO:0003723
Vimu3g03667 689 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 416 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vimu3g03667 689 Coils Coil 6 26 - -
Vimu3g03667 689 CDD RRM1_RBM39_like 267 339 - -
Vimu3g03667 689 SMART rrm1_1 596 674 IPR000504 GO:0003723
Vimu3g03667 689 SMART rrm1_1 371 440 IPR000504 GO:0003723
Vimu3g03667 689 SMART rrm1_1 267 339 IPR000504 GO:0003723
Vimu3g03667 689 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 619 671 IPR000504 GO:0003723
Vimu3g03667 689 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 335 IPR000504 GO:0003723
Vimu3g03667 689 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 417 IPR000504 GO:0003723
Vimu3g03667 689 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 343 IPR000504 GO:0003723
Vimu3g03667 689 SUPERFAMILY RNA-binding domain, RBD 263 416 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03667 Vimu-Chr3 49287683 49296520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03667 267 416 Eukaryotic Initiation Factors Gene Family AT4G34110 25.166 1.86e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03667 K13091 - gmx:100789839 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03667 3 49287683 49296520 Vimu3g03667 3 49287683 49296520 ECH