Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03661 ATGAACATCATTATGCAAAACTTGGTGGAAAGACTAAGATCTCTCGTGGGTTTGAACGGATGGGATTACTGTATCTACTGGAAATTGAGTGAAGACGAAAGGTTTCTGGAGTGGTTGGGTTGCTGTTGTGGTGGCACTGAAAGCAACAAAAATGCTGGTGAAGAACATCTTTTCCCTGTGTCTTCTGTGGTTTCATGCAGGGATACCACTTATCCACACCCGAGAACAAAGCCCTGTGATCTTCTTTCCCAACTTTCCACTTCCATACCCATAGATAATTCTGGGATTCATACGCAGACCCTATTAACAAATCAACCCAGTTGGGTGAACTATTCCAATAGCTTGGATTCAAGCCTTTTGGATGAAACAATGGGGACCCAGGTTTTGATTTCAGCGCCAGGTGGACTAATTGAGCTGTTTGTAACCAAACAAGTGGCTGAAGATCATCAAGTAATAGATTTTGTCACAAACCAGTGCATTGAAGCTGTGAACCACTCAATGAGCTTCAACATTGACGTGAATTCAATGAGCAACATGCAACAAAACCCACTTTTAGGCGATGAAAACGAAGGGAACAACAGCAGGAACACTCATTTCCACCCTTCGGAACATGTCATGAGCATGGACCACCGCATCGGCCTGTGCAGTTCTCCACTGAACTTCATGCAGCAGTTTAACTACAACCAGCTGAACAGAATGAAAAGCGATGCCTTTTCTGAAGAATACCAAGGTTCCTTCCTTCATGAGAAGCAAACTAACCCAGAACACGAGCATGACAATAACACGTATCAGAAAAGCCTCATGACAACAGATTCACAGTACATGGAGTCTCTGGAAGCAAAAGAGAAGCAAGAGGAGGAGAAGGAGTTGCTGAAACATGTTGTTGCTCGATCGGATTCAATGTCAGATTGCAGTGAGCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAAGGGAATCAGTCAAAGAACCTGATGGCCGAGAGGAAGAGAAGGAAGAAGCTGAATGACAGGTTATACAAGCTTCGTTCTTTGGTTCCACGGATCTCTAAGTTGGACAGGGCCTCAATCCTTGGAGATGCTATTGAATACGTAAAGGATTTGCAGAAACAAGTGAAGGAGCTGCAAGATGAGCTTGAGGAGAATGCAGACACCGAAAGCAACTGCATCAATGGAAATAATGATAACAATAATAATCAATATGTGGGTGTAGGTGAACCGTGTCCAAATTCAGAACCTGCTAAGGGTCAATCTGGGTTGCATGTGGGTACCTCAGGAAATGGCTATGTATACAAACAAAAGGAGGATGCAGCATTGATTGAGAAGCAAACCCAGCAAATGGAGCCGCAAGTGGAAGTAGCTCTGATAGATGGGAATGAGTATTTTGTGAAGGTATTCTGTGAACACAGACCTGGTGGGTTTGTGAAATTGATGGAGTCGTTGAACACTATTGGCATGGACGTGGTGCATGCAACGGTAACCAGCCACAAGGGCTTGGTGTCAAATGTTTTTGAAGTCGAGAAAAAAGACAATGAAACTGTCGAAGCCGAAGATGTAAGAGAGTCGCTGCTGGAGCTGACGCGGAACCGTTACAGAGGATGGAGTCATGAGGTGACACCAACGTCGGAGAATGCTGTCGGAAGGGATCAACACCAGATATCATCTTTTTCCCACCATTTTCATACTTAA 1701 0.4433 MNIIMQNLVERLRSLVGLNGWDYCIYWKLSEDERFLEWLGCCCGGTESNKNAGEEHLFPVSSVVSCRDTTYPHPRTKPCDLLSQLSTSIPIDNSGIHTQTLLTNQPSWVNYSNSLDSSLLDETMGTQVLISAPGGLIELFVTKQVAEDHQVIDFVTNQCIEAVNHSMSFNIDVNSMSNMQQNPLLGDENEGNNSRNTHFHPSEHVMSMDHRIGLCSSPLNFMQQFNYNQLNRMKSDAFSEEYQGSFLHEKQTNPEHEHDNNTYQKSLMTTDSQYMESLEAKEKQEEEKELLKHVVARSDSMSDCSEQNEEEEDGKYRRRNGKGNQSKNLMAERKRRKKLNDRLYKLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCINGNNDNNNNQYVGVGEPCPNSEPAKGQSGLHVGTSGNGYVYKQKEDAALIEKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFVKLMESLNTIGMDVVHATVTSHKGLVSNVFEVEKKDNETVEAEDVRESLLELTRNRYRGWSHEVTPTSENAVGRDQHQISSFSHHFHT 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03661 566 CDD bHLH_AtAMS_like 326 391 - -
Vimu3g03661 566 MobiDBLite consensus disorder prediction 389 404 - -
Vimu3g03661 566 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 385 IPR036638 GO:0046983
Vimu3g03661 566 MobiDBLite consensus disorder prediction 295 334 - -
Vimu3g03661 566 MobiDBLite consensus disorder prediction 383 404 - -
Vimu3g03661 566 ProSiteProfiles ACT domain profile. 466 538 IPR002912 -
Vimu3g03661 566 Coils Coil 362 392 - -
Vimu3g03661 566 MobiDBLite consensus disorder prediction 547 566 - -
Vimu3g03661 566 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 221 532 - -
Vimu3g03661 566 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 156 IPR025610 -
Vimu3g03661 566 Gene3D - 311 388 IPR036638 GO:0046983
Vimu3g03661 566 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
Vimu3g03661 566 Pfam Helix-loop-helix DNA-binding domain 328 373 IPR011598 GO:0046983
Vimu3g03661 566 SMART finulus 329 378 IPR011598 GO:0046983
Vimu3g03661 566 CDD ACT_UUR-ACR-like 467 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03661 Vimu-Chr3 49238284 49241414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03661 5 545 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 45.422 1.23e-139 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g03661 bHLH-MYC_N 1.1e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03661 - - gmx:100798282 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03661 3 49238284 49241414 Vimu3g03661 3 49238284 49241414 ECH