Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03654 ATGGAATGCCTCTTAGTTGATCCTAAAGAGCGACCGATGCTACTTGCCGAACAATGTTCCAACACTCAAGAACAGAGAGAAAGGGCAGCAGAACTTATGTTTGAAAAATATAAAGTACCAGCATTGTTTTTGGCGAAGAATGCGGTTCTCACATCTTTTGCATCAGGGCGTGCTACCTCGTTAGTTGTTGATAGCTTATCTTTAATCATTGCTTTTGTCACTGTTGTGGCTAAAAGGCCCTCAACAATTGTCATATCTGAGGTAATATTTAGGACAGCTTCCCGATTGTCGTGTGCCAGAGCAGTCACCGTGGCTGTGATAAGTTCTCCTATAGGAGGACAATTTCTGACAGAATGCTTGACGAGAAGTTTGGAAGCCAAAGGTATCACACCAAGACCTCGATATTCATTCAAGAAAAAGGAAATAAGTCCTGGGAACCTTCAGGTGTTGTATTCCATTGTTGCCCCCAGAGGGCTTCAACTTTGTGGTAGAACTATCATGACATGGAATAAGGACTCCATTTTCACATTTTCAAGCCTGATGCCCACTCTTGAAAAAGCGAGTGATTGTGCTCCCAAGAATGTTGTGCCCAACAACGTCGTCGCGAATGCGCTTTTGTCGTCTGATGTTCCCGCCAAGAAGCTCGCCAGACAGTTCGATTTCACCGGCTTCGACGAGATGACACTGCAGTCGCATTCTGCTTACGTCAGGGCTGAAAGGGACCGCATGGTGCTAGATATTAAGGTTAAGTTGCAGGGTTTATGGCTGCGGCTTCTTAAACTGGGAGCGACAGATGATCCTCTCTCGTCTTTTGAATATGGGACAATACTTGCTTTGATTGAATCTGATGCAGAAGGGATTGGTGGTAGTGGATTTGTTGAATGTATAAGGGAGCATATAAACTCGGGTTGGGACTGTCATCTCACTGAAGAACAGTTTATTGCGGTGAAAGAATTGGTAAAAGATGTTATTCAATTATGGGTTCAAGTTTTCCCTTGCAATCTGAATGTTGGCCACCTACATTTGCCGCATTCTAGGGCAATAGCCTTGGGAGTGAGAGGGATTGTTGGAGAGTTGGCTTAA 1083 0.4441 MECLLVDPKERPMLLAEQCSNTQEQRERAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSLSLIIAFVTVVAKRPSTIVISEVIFRTASRLSCARAVTVAVISSPIGGQFLTECLTRSLEAKGITPRPRYSFKKKEISPGNLQVLYSIVAPRGLQLCGRTIMTWNKDSIFTFSSLMPTLEKASDCAPKNVVPNNVVANALLSSDVPAKKLARQFDFTGFDEMTLQSHSAYVRAERDRMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINSGWDCHLTEEQFIAVKELVKDVIQLWVQVFPCNLNVGHLHLPHSRAIALGVRGIVGELA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03654 360 SUPERFAMILY Actin-like ATPase domain 4 63 IPR043129 -
Vimu3g03654 360 Gene3D - 1 79 - -
Vimu3g03654 360 PANTHER ACTIN 4 134 IPR004000 -
Vimu3g03654 360 Pfam Actin 3 65 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03654 Vimu-Chr3 49192525 49198570 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03654 4 65 Cytoskeleton Gene Families AT5G09810 46.774 1.10e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03654 K11340 - gmx:100819549 177.563