Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03649 ATGACTGTTTTTTTCAGGGAATGCCTCTTAGTTGATCCTAAAGAGCGACCGATGGTACTTGCCGAACAATGTTCCAACACTCAAGAACAGAGAGAAAGGGCAGCAGAACTTATGTTTGAAAAATATATAGTACCAGCATTGTTTTTGGCGAAGAATGCGGTTCTCACATCTTTTGCATCAGGGCGTGCTACCTCGTTAGTTGTTGATAGATTGGAACTTAGTGGTGCTGGATCAACTACAGTTGCACCAGTACTGGATGGTTATGTTCTTCAAAAGGCTGTGATAAGTTCTCCTATAGGAGGACAATTTCTGACAGAATGCTTGACGTTTCCTGGGAACCTTCAGAGGCGTAGGATAAAAGACAAAAGTGTCGACCTTGAACGGGTAATATTAAAAGTGGGTTTTAGGAGAGTTGAATCAAAGGGCAGAGGAGGAAAGAGGAGTGAGACTTCTATGAATTTGCGCCGCGAGATTGACACTTTAGCGGAGGAGCGTGGGATGACGAGGGGAAGGAGATCTGGCCGTTGA 528 0.4451 MTVFFRECLLVDPKERPMVLAEQCSNTQEQRERAAELMFEKYIVPALFLAKNAVLTSFASGRATSLVVDRLELSGAGSTTVAPVLDGYVLQKAVISSPIGGQFLTECLTFPGNLQRRRIKDKSVDLERVILKVGFRRVESKGRGGKRSETSMNLRREIDTLAEERGMTRGRRSGR 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03649 175 PANTHER ACTIN 4 109 IPR004000 -
Vimu3g03649 175 SUPERFAMILY Actin-like ATPase domain 61 109 IPR043129 -
Vimu3g03649 175 MobiDBLite consensus disorder prediction 141 175 - -
Vimu3g03649 175 SUPERFAMILY Actin-like ATPase domain 4 68 IPR043129 -
Vimu3g03649 175 Pfam Actin 5 110 IPR004000 -
Vimu3g03649 175 CDD NBD_sugar-kinase_HSP70_actin 3 94 - -
Vimu3g03649 175 Gene3D - 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03649 Vimu-Chr3 49168032 49171499 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03649 4 108 Cytoskeleton Gene Families AT5G09810 39.048 1.21e-18 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03649 K11340 - gmx:100819549 175.637