Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03643 ATGTGGGTGGTGCCTAATAGTTTCATAACAGAAGATGAAGAAGATGAGCATGACCATGTTACTCTTTGGACATCTGAAAGCAGACCTTGGCATGTTGAATTTTATCGTAATAATAGCAGTTATCAAATAAATTTTACTACTGGATGGAAGAATTTTGTAAAGGATAATAACTTGCAACTAGGGGATGTATGTGTTTTTGAGAAAATCAAGAAATCGGGAATTTCAGTCAAATATCTTCCAAAGGATTTCTTAAAATATCATGGTATTCCTCATTCAAATGCAGTGACCCTGAAAGTTGGGGAGAGATCATGGGATGTGAAGCTAGACTCTCACTGTAGATTCACCCGTGGTTGGTGTGAACTTATTAGAGGGTGTCAATTGAAGCCTGGAGATGTTTGTCGATTCGAGTTGATGGATAAGAAGAATAAGAAGATTGTGTTTCAAGTTACCATTGTAATATGTATCAAGTGA 471 0.3652 MWVVPNSFITEDEEDEHDHVTLWTSESRPWHVEFYRNNSSYQINFTTGWKNFVKDNNLQLGDVCVFEKIKKSGISVKYLPKDFLKYHGIPHSNAVTLKVGERSWDVKLDSHCRFTRGWCELIRGCQLKPGDVCRFELMDKKNKKIVFQVTIVICIK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03643 156 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 15 74 IPR044837 -
Vimu3g03643 156 Gene3D - 76 154 IPR015300 -
Vimu3g03643 156 Gene3D - 1 75 IPR015300 -
Vimu3g03643 156 SMART B3_2 66 151 IPR003340 GO:0003677
Vimu3g03643 156 CDD B3_DNA 20 73 IPR003340 GO:0003677
Vimu3g03643 156 CDD B3_DNA 78 151 IPR003340 GO:0003677
Vimu3g03643 156 Pfam B3 DNA binding domain 3 70 IPR003340 GO:0003677
Vimu3g03643 156 Pfam B3 DNA binding domain 77 149 IPR003340 GO:0003677
Vimu3g03643 156 ProSiteProfiles B3 DNA-binding domain profile. 1 82 IPR003340 GO:0003677
Vimu3g03643 156 SUPERFAMILY DNA-binding pseudobarrel domain 76 150 IPR015300 -
Vimu3g03643 156 SUPERFAMILY DNA-binding pseudobarrel domain 3 77 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03643 Vimu-Chr3 49134255 49135649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03643 2 67 REM Transcription Factor Family AT4G33280 39.394 5.39e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu3g03643 B3 6.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03643 - - vum:124838216 236.113