Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03642 ATGTCTTCTGGTGATGGTAGTGTCATTCACTTCTTCAAGAAAATTGATGCAGACACACTTAGAAACGGGAATCTGAGAATACCTCGGAGTTTTGTGAGTAAATACTGGCAAGATATATCAAATCCACTGCATCTTCTTCTTCCCAAAGGTGTTAAATGGGAAGTGAAGTGGAGAAAAGTTGGTGCTGACATTTGGTTAATTGATAAATGGAAGAAATTTGCAGAATTTTATTCTTTGGATGAAAATGATATCTTGATGTTCAAATATGTGGGTATGTCTCTGTTTGAAGTGGTGATACTTCTTCAAACTGGCTTGGAAATTATGTACCCTTTAAAGGAAGCAACTTTAGATAATGCAGAGAATGGTAAAGGTAATTCTTCACTACACTTTAAGAAGGCAAAATCTTCTTTACAAAGTTGTCGTTTTGGCAAGAGGGTGAAAACCAACTGTAAAAACCCACATAATATCTCTAAAGATGTTGCAAATAGAAGTGGTCCATCTCATAGCATCAAGGAGGAGTTAGATGAACAACATACAAATGGTTTTCATAGTACAAAATTCCAAAAAAGAGGTACAAAAAGAAAACCCTCCGAGTGTAATTTTTCAACTAGAAGTTGCACTGCTATGGAGAGAGCTGAATCTTTCCGCTCTGAGAATCCCATCTTCATTCGTAAAATGCAACCAACATATATTAAAAGACATGTTATGGGGATGCCGAACAATTTTCTAACAGAAGATGAAGAAGATGAGCATGACAGTGTTACTCTTTGGACATCTGAAAGCAGACCTTGGCCTGTTCATTTTATTCGAAATAATAGCAGTAGGCAAATATATCTTACTTCTGGATGGAAGAATTTTGAAAAGGATAATAACTTGAAACTAGGGGACGTATGTGTATTTGAGAAAATCAAGAAATCGGGAATTTCATTCAAAGTTATAATTTTTAGAGACAGAGAAGAATCAAGTTCTCCCAGGTTTTCAGATCATTCAATTCCTGAATGCAAAGAAAGGGAGTTAGAGAATCAGTTCAGTGTCTGCATCAAATCTAAGGATTTCCATTCTTTGAGTCTTCCAAGGGATTTCTTAAAAAATCATGGGATTCATCGTTCAAAGGCAGTGACACTGAAAGTTGGGGAGAGATCATGGGATGTGAAACTAGACTCTCACTGTAGATCCACCAGTGGTTGGTGTGAATTTATCAGAGAGTGCCAATTGAAGTATGGAGATATTTGTCTATTCGAGTTGATCGATAAGAAGAAGATTGTGTTTGAAGTTACCATTGGAGTATGCATCGAGTGA 1299 0.3649 MSSGDGSVIHFFKKIDADTLRNGNLRIPRSFVSKYWQDISNPLHLLLPKGVKWEVKWRKVGADIWLIDKWKKFAEFYSLDENDILMFKYVGMSLFEVVILLQTGLEIMYPLKEATLDNAENGKGNSSLHFKKAKSSLQSCRFGKRVKTNCKNPHNISKDVANRSGPSHSIKEELDEQHTNGFHSTKFQKRGTKRKPSECNFSTRSCTAMERAESFRSENPIFIRKMQPTYIKRHVMGMPNNFLTEDEEDEHDSVTLWTSESRPWPVHFIRNNSSRQIYLTSGWKNFEKDNNLKLGDVCVFEKIKKSGISFKVIIFRDREESSSPRFSDHSIPECKERELENQFSVCIKSKDFHSLSLPRDFLKNHGIHRSKAVTLKVGERSWDVKLDSHCRSTSGWCEFIRECQLKYGDICLFELIDKKKIVFEVTIGVCIE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03642 432 Gene3D - 332 429 IPR015300 -
Vimu3g03642 432 Gene3D - 202 320 IPR015300 -
Vimu3g03642 432 SUPERFAMILY DNA-binding pseudobarrel domain 343 426 IPR015300 -
Vimu3g03642 432 ProSiteProfiles B3 DNA-binding domain profile. 340 429 IPR003340 GO:0003677
Vimu3g03642 432 SUPERFAMILY DNA-binding pseudobarrel domain 7 110 IPR015300 -
Vimu3g03642 432 CDD B3_DNA 10 100 IPR003340 GO:0003677
Vimu3g03642 432 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Vimu3g03642 432 SMART B3_2 343 429 IPR003340 GO:0003677
Vimu3g03642 432 SMART B3_2 11 103 IPR003340 GO:0003677
Vimu3g03642 432 SMART B3_2 222 318 IPR003340 GO:0003677
Vimu3g03642 432 CDD B3_DNA 220 316 IPR003340 GO:0003677
Vimu3g03642 432 ProSiteProfiles B3 DNA-binding domain profile. 221 318 IPR003340 GO:0003677
Vimu3g03642 432 SUPERFAMILY DNA-binding pseudobarrel domain 217 316 IPR015300 -
Vimu3g03642 432 Gene3D - 4 103 IPR015300 -
Vimu3g03642 432 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 336 427 IPR044837 -
Vimu3g03642 432 CDD B3_DNA 353 427 IPR003340 GO:0003677
Vimu3g03642 432 Pfam B3 DNA binding domain 353 420 IPR003340 GO:0003677
Vimu3g03642 432 Pfam B3 DNA binding domain 12 98 IPR003340 GO:0003677
Vimu3g03642 432 Pfam B3 DNA binding domain 224 316 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03642 Vimu-Chr3 49129953 49131749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03642 11 316 B3 DNA Binding Superfamily AT3G18990 29.107 8.97e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu3g03642 B3 2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03642 - - vum:124838216 701.049