Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03641 ATGTCTTCCGGTGATGGTAGTGTCATTAACTTCTTCAAGAAAATTGATGCAGACACACTTCGAAACGGAGATCTGAGAATACCTCGGAGTTTTGTGAGTAAATACTGGCAAGATATATCAAATCCACTGCATCTTCTTCTTCCCAAAGGTGTCGAATGGGAAGTGAAGTGGAGAAAAGTTGGTGCTGACATTTGGTTAATTGATAAATGGAAGAAATTTTCAGAATTTTATTCTTTGGATGAAGATAATCTCTTGATGTTCAAATATGTTGGTATGTCTCAGTTTGAGGTGGTCATACTTCATCAAACTGGCTTGGAAATTATGTACCCTTTAAAGGAAGCAACTTTAGATAATGTTGAGAATGGTAATGGTAATTCTTCACTACACTTTAAGAAGACAAAATCTTCTTTACAAAGTTGTCGTTTTGGCAAGAAGGTGAAAACCAACTGTAAAAACCCACGTAATATCTCTAAAGATGTTGCAAATAGAAGTGGTCCATCTCAAAGGATTAAGGAGGAGTTAGATGAACAACATGCAAATGGTTTTCATAGTACAAAATCCCAAAAAAGAGGTACAAAAAGAAAACCTTCTGCCTGTAATTTTTCAACTAGAAGTGGCACTGCTATGGAGAGAGCTGAGTCTTTCCGATCCGAGAATCTCTTCTTCATTCGTAAAATGCAACCATCATATATTCCAAGACGTATGATGGTACCGAGTAGTTTCATAACAGAAGATGAAGAAGATGAGCATGACCGTGTTACTCTTTGGACAACTGAAAGCAGACCTTGGCATGTTGAATTTTATCGGAATAATAGCAGTAACCAAATAAATCTTACTACTGGATGGAAGAATTTTGTACAGGATAATAACTTGCGACTAGGGGATGTATGTGTATTTGAGAAAATCAAGAAATCGGGAATTTCATTCAAAGTTATAATTTTTAGAGACAGAGAAGAATCAAGTTCTCCCAGGTTTTCAGATAATTCAATTCCTGAATGCGAAGAAAGGGAGCTAGAGAATCACTTCAGTGTCTGCCTAAAACCTAAGGATTTCCACTCTTTGAATCTTCCAAGGAATTTCTTAAAAAGTCATGGTATTCGTGATTCAAATGCAGTGATCCTGGAAGTTGGGAAGAAATCATGGGATGTGAAGCTAGACTCTTACTGGAGATTCACCGCTGGGTGGGTTCAATTTATTAGAGAGTGTCAATTGAAGCCTGGAGATGTTTGTCGATTCGAGTTGATGGATAAGAAGAAGATTGTTTTTGAAGTTACCTTTGAAACATGCATCAAGTGA 1296 0.3696 MSSGDGSVINFFKKIDADTLRNGDLRIPRSFVSKYWQDISNPLHLLLPKGVEWEVKWRKVGADIWLIDKWKKFSEFYSLDEDNLLMFKYVGMSQFEVVILHQTGLEIMYPLKEATLDNVENGNGNSSLHFKKTKSSLQSCRFGKKVKTNCKNPRNISKDVANRSGPSQRIKEELDEQHANGFHSTKSQKRGTKRKPSACNFSTRSGTAMERAESFRSENLFFIRKMQPSYIPRRMMVPSSFITEDEEDEHDRVTLWTTESRPWHVEFYRNNSSNQINLTTGWKNFVQDNNLRLGDVCVFEKIKKSGISFKVIIFRDREESSSPRFSDNSIPECEERELENHFSVCLKPKDFHSLNLPRNFLKSHGIRDSNAVILEVGKKSWDVKLDSYWRFTAGWVQFIRECQLKPGDVCRFELMDKKKIVFEVTFETCIK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03641 431 MobiDBLite consensus disorder prediction 173 206 - -
Vimu3g03641 431 SUPERFAMILY DNA-binding pseudobarrel domain 215 315 IPR015300 -
Vimu3g03641 431 ProSiteProfiles B3 DNA-binding domain profile. 220 317 IPR003340 GO:0003677
Vimu3g03641 431 Pfam B3 DNA binding domain 347 419 IPR003340 GO:0003677
Vimu3g03641 431 Pfam B3 DNA binding domain 12 99 IPR003340 GO:0003677
Vimu3g03641 431 Pfam B3 DNA binding domain 221 315 IPR003340 GO:0003677
Vimu3g03641 431 PANTHER B3 DOMAIN-CONTAINING 306 422 - -
Vimu3g03641 431 SUPERFAMILY DNA-binding pseudobarrel domain 9 110 IPR015300 -
Vimu3g03641 431 CDD B3_DNA 341 426 IPR003340 GO:0003677
Vimu3g03641 431 ProSiteProfiles B3 DNA-binding domain profile. 339 428 IPR003340 GO:0003677
Vimu3g03641 431 SMART B3_2 342 428 IPR003340 GO:0003677
Vimu3g03641 431 SMART B3_2 222 317 IPR003340 GO:0003677
Vimu3g03641 431 SMART B3_2 11 103 IPR003340 GO:0003677
Vimu3g03641 431 SUPERFAMILY DNA-binding pseudobarrel domain 341 424 IPR015300 -
Vimu3g03641 431 CDD B3_DNA 11 100 IPR003340 GO:0003677
Vimu3g03641 431 Gene3D - 202 319 IPR015300 -
Vimu3g03641 431 Gene3D - 330 428 IPR015300 -
Vimu3g03641 431 CDD B3_DNA 221 315 IPR003340 GO:0003677
Vimu3g03641 431 Gene3D - 5 104 IPR015300 -
Vimu3g03641 431 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03641 Vimu-Chr3 49125352 49127051 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03641 342 425 B3 DNA Binding Superfamily AT3G18990 30.000 5.34e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu3g03641 B3 2.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03641 - - vum:124838216 733.021