Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03640 ATGTCTTCCAGTGATGGTAGTGCCATTCACTTCTTCAAGAAAATTGATGAAGACACACTTCGAAACGGGGATCTGAGAATACCTCGGAGTTTTGTGAGTAAAAACTGGCAAAATATATCAAATCCACTGAATCTTCTTCACAAAGGTGCTGAATGGGAAGTGCAGTGGAGAAAAGTTGGTGCTGACATTTGGTTAATTGAGAAATGGAAGAAATTTGCAGAATTTTACTCTTTGGATGAAGATAATCTCTTGATGTTCAAATATGTTGGTATGTCTCGGTTTGAGGTGGTCATACTTCATCAAACTGGCTTGGAAATTATGTACCCTTTAAAGGAAGCAACTTTAGATAATGCAGAGAATGCTAATGGTAATTCTTCACTACACTTTAAGAAGACAGAATCTTCTTTACCACGTTGTCGTTTTTACAAAAAGGTGAAAACCAACCATAGAAACCCGCCTAATATCTCTGAAGATGTTGCAAATAGAAGTGGTCCATCTCAAAGGATCAAGGATGAATTAGATGAACAACACACAAATGGTTTTCATATTACAAATTTCCAAAAAAGAGGTGATACGTTGGATCTCTGGTTTTTTCTGTTCTGTTTCAAAATCTTGAAGATATTGTCACCCTTTGTTTTTCTTTTTGTTTGA 651 0.3594 MSSSDGSAIHFFKKIDEDTLRNGDLRIPRSFVSKNWQNISNPLNLLHKGAEWEVQWRKVGADIWLIEKWKKFAEFYSLDEDNLLMFKYVGMSRFEVVILHQTGLEIMYPLKEATLDNAENANGNSSLHFKKTESSLPRCRFYKKVKTNHRNPPNISEDVANRSGPSQRIKDELDEQHTNGFHITNFQKRGDTLDLWFFLFCFKILKILSPFVFLFV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03640 216 SMART B3_2 11 102 IPR003340 GO:0003677
Vimu3g03640 216 Pfam B3 DNA binding domain 12 98 IPR003340 GO:0003677
Vimu3g03640 216 ProSiteProfiles B3 DNA-binding domain profile. 10 102 IPR003340 GO:0003677
Vimu3g03640 216 CDD B3_DNA 10 99 IPR003340 GO:0003677
Vimu3g03640 216 PANTHER B3 DOMAIN-CONTAINING 2 139 - -
Vimu3g03640 216 Gene3D - 2 103 IPR015300 -
Vimu3g03640 216 SUPERFAMILY DNA-binding pseudobarrel domain 9 109 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03640 Vimu-Chr3 49111480 49112272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03640 11 110 B3 DNA Binding Superfamily AT4G01580 32.673 3.58e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu3g03640 B3 2.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03640 - - vun:114191442 302.753