Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03639 AATTTTATGTTCATGATGTCTGATAGAGTTGAATCCACAGAGCATGTTATTTCACAAAATTTCAAGATCCTTCACAAAAACATGTCATTGACCGGTCGAGGTTTTGAATTGCATTCCACAGGGAGAACGAATTCAGAAAGAGAGCCAGCCAAAGGGAAGAGGAACCAAGCAGACAACAGCGATCGGAGCTCCAAGAGGCAGACAACACCATTTTCACCGCCGCTTCTACTACCATCAAGTACACGCATGGCTTCTGAGTGTAATGCTACCCTGCCAATCTCTTTCTTCAAAGTTATTATGATAACCAATCTTCAAACCGTTAAAATACCAAATACATTCACTGCCAAATATGGAGGTGGTCTCCCCAATCCTTTGTTCATGAAGCTTCCAGATGAAACTCAATGGAAAATTATTTGGGAAAATGCAAACGGTGAGATTTGGTTGAGGGAAGGCTGGAAGGAATTTGTGGAACATTATTCCTTGGAGCACGGACATTTTGTTTTCTTTGATTACGAAGGAATAGATCAGATTGATGTAAAGATATTTAAGCAAAGTGGAGTAGAAATAGACTATTCCTGTGCTACTGGTAATGGGAATGACAACCTTGATCAAAACCTTCATCAAAATGAGGATGAACCCATCGTAATTTTGGACGAAGAAGAGAGCCCTGAACAAATAGGAGGTGGGTCTGTTCAAAGAACTTCATCTTTGAACCAGCCAAATCAAACTAAGGCAAGAGAAGTAGCATGTAATTTCATTTCATGCAATCCCTTTTTCACGGTTGCCATCAAACCTTCTCTCGCGATGGAATATCGGCTGTACGTACCAGATTTGGAAGGTATTATTGAAAAGAAGAAGTATGTGGTGCTGCAGCGTGGGGAAAGATTGTGGAAAGTAAAATTGTTATATAATAAAGGGTGTTTTTCTCGTTATAGTTTTGGTGCAGGTGTTCACTTGTTTTTAACAGAAAATGAGTTGAAAGTAGGAGATGTTTGTATATTTGAATTGATTAGCAAGAAGAATTGTATTTTTAAAGTTCATGTGTTTTAG 1050 0.3876 NFMFMMSDRVESTEHVISQNFKILHKNMSLTGRGFELHSTGRTNSEREPAKGKRNQADNSDRSSKRQTTPFSPPLLLPSSTRMASECNATLPISFFKVIMITNLQTVKIPNTFTAKYGGGLPNPLFMKLPDETQWKIIWENANGEIWLREGWKEFVEHYSLEHGHFVFFDYEGIDQIDVKIFKQSGVEIDYSCATGNGNDNLDQNLHQNEDEPIVILDEEESPEQIGGGSVQRTSSLNQPNQTKAREVACNFISCNPFFTVAIKPSLAMEYRLYVPDLEGIIEKKKYVVLQRGERLWKVKLLYNKGCFSRYSFGAGVHLFLTENELKVGDVCIFELISKKNCIFKVHVF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03639 349 PANTHER B3 DOMAIN-CONTAINING 94 348 - -
Vimu3g03639 349 Gene3D - 237 349 IPR015300 -
Vimu3g03639 349 Pfam B3 DNA binding domain 100 183 IPR003340 GO:0003677
Vimu3g03639 349 Pfam B3 DNA binding domain 280 346 IPR003340 GO:0003677
Vimu3g03639 349 CDD B3_DNA 94 183 IPR003340 GO:0003677
Vimu3g03639 349 MobiDBLite consensus disorder prediction 62 79 - -
Vimu3g03639 349 Gene3D - 90 186 IPR015300 -
Vimu3g03639 349 ProSiteProfiles B3 DNA-binding domain profile. 92 185 IPR003340 GO:0003677
Vimu3g03639 349 SUPERFAMILY DNA-binding pseudobarrel domain 255 349 IPR015300 -
Vimu3g03639 349 ProSiteProfiles B3 DNA-binding domain profile. 258 349 IPR003340 GO:0003677
Vimu3g03639 349 SMART B3_2 95 185 IPR003340 GO:0003677
Vimu3g03639 349 SMART B3_2 258 347 IPR003340 GO:0003677
Vimu3g03639 349 CDD B3_DNA 257 349 IPR003340 GO:0003677
Vimu3g03639 349 MobiDBLite consensus disorder prediction 34 79 - -
Vimu3g03639 349 MobiDBLite consensus disorder prediction 40 61 - -
Vimu3g03639 349 SUPERFAMILY DNA-binding pseudobarrel domain 94 192 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03639 Vimu-Chr3 49103739 49108630 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03639 218 349 B3 DNA Binding Superfamily AT3G18990 31.429 1.13e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu3g03639 B3 6.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03639 - - vra:106773422 292.352