Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03638 ATGGGTAGTTGTGGAAGAGAAGGAGCTGTCAGGCAATATATAAGGTCAAAGGTTCCTCGTTTAAGGTGGACTCCCGAGCTGCACCGTTGCTTTGTTCACGCCATTGATAGCCTTGGAGGTCATCAAAAGGCTACTCCTAAGCTTGTTCTTCAGTTGATGGATGTTAAAGGGCTCACAATTTCACACGTCAAGAGTCATCTTCAGAAGCATGAGGGGCGACTTGGGGAGACAAGGTACCGAACCCTCTTTACTGCAAAACATATGAGCAATGACAGAGTCTTAATCTTTGTAGTTGTTCCTCATGACGATCGTGGTAGGACACAGTCCCAACATAGGAACCAATCTTTTGAGGAGCACGATGATGGTTGTGTTGATGAAGTGAATGATGTTTGCGTTGAGTACTCATGTTCGAAACCCATGGGAATAGAATCTGATTCCTTCTTCGGCCACAGCAATCTCCCTCCGAAAAGAGCAAGAATCGAGACGAGGAGTTCCATCTCAGAGAGTCTGCAATGCAGCCAAAGATTATGTGATGCAGTTCCAAATCCGTACTGTTTTTATGATTATCTGCAGAAGCCCATGGCTGAGCACAAGGGAATAAAGGAGTTCTGTAAGGCTTCAACATGGCAGACACAACCCCATTCCTCTCTGTTACTACCACATTTTCCCACCCTCACTTCATTCCAATCTCCTAACCAACAATCAGATTTCCTCCAGGTGACAACATTAAATGAAGGAAAGAGCAGTGGAAAAGGAGTTAATGTAGATGTGAACACTGAGACAGGTGAGGCAGAAGTTGAGGATGTAGGAGCGTATGAATTGTCATTGTCGCTTACATTGCCAAATCCTTCACCTCAGAGAAGTAATTGTTCATGTTCAGGCAGTGAGATCAGTGAGACAATCTCATCATCCCCTGCTGCAGGGTTTAGCAACAACTACAAGGACTGCACCAGTTCATCCAATCTCAATGAAACAATTAATTTGGACCTTTCTTTAGCCCTATCTGGCAATTGA 1014 0.4448 MGSCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIDSLGGHQKATPKLVLQLMDVKGLTISHVKSHLQKHEGRLGETRYRTLFTAKHMSNDRVLIFVVVPHDDRGRTQSQHRNQSFEEHDDGCVDEVNDVCVEYSCSKPMGIESDSFFGHSNLPPKRARIETRSSISESLQCSQRLCDAVPNPYCFYDYLQKPMAEHKGIKEFCKASTWQTQPHSSLLLPHFPTLTSFQSPNQQSDFLQVTTLNEGKSSGKGVNVDVNTETGEAEVEDVGAYELSLSLTLPNPSPQRSNCSCSGSEISETISSSPAAGFSNNYKDCTSSSNLNETINLDLSLALSGN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03638 337 Gene3D - 18 74 - -
Vimu3g03638 337 FunFam Two-component response regulator 15 77 - -
Vimu3g03638 337 SUPERFAMILY Homeodomain-like 17 71 IPR009057 -
Vimu3g03638 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Vimu3g03638 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 69 IPR006447 GO:0003677
Vimu3g03638 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 105 IPR046955 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03638 Vimu-Chr3 49081411 49085128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03638 1 72 G2-like Transcription Factor Family AT1G14600 72.727 2.66e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu3g03638 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03638 - - gmx:100787188 400.593