Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03628 ATGGCAACAGATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGTAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACATAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAATGCTCTAAGAAATATGCCGTTCAATCAGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATACAGATGTGATTGTGGTACACTCTTCTCCAGAAATGGCCATAAACAGAAGAAGGAGAACAGTGTCCGGTTTGGTTTTGGCTTCTTTGGGGTTGGCTTAAGGGTTACAATAGATTCTTCTGATTCTGTCCACTCGGTTGGTTGCTTCTCTCTCGTATGGTTTCCTTTGTCATCATTCCTTTCTATTGGTACGGTGGCCAACCAAGAGAAATGGAAGGAAACATCCCCCCACGTGAATCATCTCTGGAAACTGCCTTGGAGGGACAGTTTCATCACCCACAGGGCGTTCTGCGATGCACTTGCTCAAGAGAGTGCAAGACAGCCACCAAGCCTTGGCGCCGCCATCGGCACCCACCTCTTCGGAACCACCGCCAACACCATCCCTCTAAACCTTTCTCAGGTTGCTTCTCACATTTCCAACATCCAAGACCCCAACACCCAGCCAACAGAACTCCTCCGCCTCGGTGGCGCCGCCGCAAGAACCTCCCAATTCGACCATCTCCTAGGTTCTCCCTTCAGACCCTCCCAACAACAACCACCCTTCTTCATGGAACCTAACCAAAACTACCACCCCGACCAACAACAACAACAAGGGCTGCTCCAAAACAAAACCTTCCAACAAGGACTGATGCAGATCCCTGATCATCTCAGCAACAGCAACTCACCCTTTAACCTTCCTTTCCTTTCAAACGCCACCAACAATGCTTCATTCACTGAAAACTTCACCAATACCAACAACACCAGCAACAACAACGAGAGCGCTAACTTCTTCACAACTTCAAGCGCTCCCTCTCTCTTCAGCAACAACAACAACAACGCTGTCAGTGCAATCGCCAATGCCAGTGCACTATCTCACATGTCCGCAACTGCACTGCTTCAGAAAGCCGCACAGATGGGTGCATCTTCGAGCAACAGCACCGCTTCGCTGTTGAAAAGCTTCGGAAGCGCGTCCTCCAGCAGCGGCTCAAAATCCGAGCAACACAGGCCACTGGTGAACGCTGCAAACTACGGCGGCGGAATCTTCGGAGGGAACGTGAACGAACAGGGTAACAGCAACCTTCAGGACCTGATGAACTCGTTCGCTGTTGGTGGAAACTCTTCCATTTTTGAAGGTGCGTTTGAAGCGTATGATCATAACAGTAATAATAACAACAGGGAGGGAAAAGTTCATGCAATGAGTGGAAGCAGCAGCATGGGGGGGTCCGATAGACTCACCCGCGATTTTCTGGGTGTGGGTCAGATTGTTAGAGGCATGAGTGGGAGTGGAGGAGTTGCACAGAGAGAACAGCAGCAGCAACAACAACATGGCTTCAACTTGAGTTCTTTGGAAGCAGATCAACGAAATAACAGTAACAACAGCAATAATAATAATAACAATGCTGCGCCGTCAGGTCAAGCTTTTGGAGGTGGTGGAGGGAATTTTCACTGA 1803 0.4897 MATDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRNGHKQKKENSVRFGFGFFGVGLRVTIDSSDSVHSVGCFSLVWFPLSSFLSIGTVANQEKWKETSPHVNHLWKLPWRDSFITHRAFCDALAQESARQPPSLGAAIGTHLFGTTANTIPLNLSQVASHISNIQDPNTQPTELLRLGGAAARTSQFDHLLGSPFRPSQQQPPFFMEPNQNYHPDQQQQQGLLQNKTFQQGLMQIPDHLSNSNSPFNLPFLSNATNNASFTENFTNTNNTSNNNESANFFTTSSAPSLFSNNNNNAVSAIANASALSHMSATALLQKAAQMGASSSNSTASLLKSFGSASSSSGSKSEQHRPLVNAANYGGGIFGGNVNEQGNSNLQDLMNSFAVGGNSSIFEGAFEAYDHNSNNNNREGKVHAMSGSSSMGGSDRLTRDFLGVGQIVRGMSGSGGVAQREQQQQQQHGFNLSSLEADQRNNSNNSNNNNNNAAPSGQAFGGGGGNFH 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03628 600 Gene3D Classic Zinc Finger 77 149 - -
Vimu3g03628 600 SUPERFAMILY beta-beta-alpha zinc fingers 22 119 IPR036236 -
Vimu3g03628 600 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Vimu3g03628 600 FunFam protein indeterminate-domain 12-like 2 70 - -
Vimu3g03628 600 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 45 IPR013087 -
Vimu3g03628 600 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 559 IPR031140 -
Vimu3g03628 600 MobiDBLite consensus disorder prediction 569 589 - -
Vimu3g03628 600 SMART c2h2final6 99 119 IPR013087 -
Vimu3g03628 600 SMART c2h2final6 64 94 IPR013087 -
Vimu3g03628 600 SMART c2h2final6 23 45 IPR013087 -
Vimu3g03628 600 Gene3D Classic Zinc Finger 2 71 - -
Vimu3g03628 600 Pfam Zinc-finger double-stranded RNA-binding 23 45 IPR022755 -
Vimu3g03628 600 MobiDBLite consensus disorder prediction 505 526 - -
Vimu3g03628 600 MobiDBLite consensus disorder prediction 569 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03628 Vimu-Chr3 48998914 49002937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03628 6 136 IDZ Gene Family AT2G02070 95.420 2.46e-90 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g03628 zf-C2H2_jaz 3.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03628 K25870 - gmx:100786121 405.986