Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03615 ATGGACACGTCAAATCCTGCTGTGTTTGTGAATGCTCAGTTGATTCCCAACTTTATAGGGAAGAGAGTAAGAACAGTGGTTCAGGTGAATCAGTATAGTGGTGGAGTTGCCACAGCAAAATCCACCGATGACTCTCAATTAACAATAAAAGGGTTGCCGCAAGTTCCCATTATGAATTTTATTGAGGTCATCGGTATTGCTGAAAGCAGCAACTCTATTGATGCCGAACTATGGACCGACTTTGGCAACACATTTGATACCAACTCTTTCAATCAGTTGTGCCAACTAGCAAATGGTGAATTCAAAGGCCTGTTTCTCTAG 321 0.4206 MDTSNPAVFVNAQLIPNFIGKRVRTVVQVNQYSGGVATAKSTDDSQLTIKGLPQVPIMNFIEVIGIAESSNSIDAELWTDFGNTFDTNSFNQLCQLANGEFKGLFL 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03615 106 Gene3D - 1 106 IPR012340 -
Vimu3g03615 106 Pfam Replication factor A protein 3 1 99 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vimu3g03615 106 SUPERFAMILY Nucleic acid-binding proteins 6 105 IPR012340 -
Vimu3g03615 106 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 106 - -
Vimu3g03615 106 CDD RPA3 6 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03615 Vimu-Chr3 48882620 48884940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03615 1 106 Core DNA Replication Machinery Family AT4G18590 53.774 8.41e-42 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03615 K10740 - gmx:100781484 192.971