Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03613 ATGGGATCCAAAATTCTTCCGCAATGGGCATCCAAACCCTGCGCCATGGGAATCGACGAAGCTGGAAGAGGCCCTGTTTTAGGACCTATGGTTTACGGTTGCTTGTACTGTGCTCAATCCTATTTGAAAACCCTAGCCACATTGAGTTTCGCAGATTCTAAGACACTAAAGGAAGAGAAGAGGGAAGAATTGTTTGAAGCTTTAAAGACTAATGATTCTATTGGATGGGCTGTTGATGTCATTGATCCCCGGGAACTCTCTGCTAAAATGCTTAAGAAGAATAAGATAAACTTGAATGAGATTTCACATGACTCTGCCATGGGCCTCATTGACAGGGTGCTAAAAATGGGAGTGCTTCTAACTGAGGTGTATATAGACACAGTTGGAGATGCAGGGAAATATGAAATGAAGCTGTCTAGAAATTTTCCATCCATCAAATTTGTGGTTGCAAAGAAGGCCGATAGCCTTTACCCCGTTGTCAGTGGTGCAAGTATAGTTGCAAAGGTCACAAGGGACCGTGCTTTAAGAGAATGGGTACTTGATGAGACTGCAGAAAACATGAAGAGGGACTTTGGCTCTGGATATCCTGGAGACCCTCAAACCAAAGCTTGGCTGGAGGATCACAAACATCGTATCTTTGGATTTCCAACCTTGGTTCGATTTAGTTGGGGAACCTGCAACTCTTATTTTAAAGACATTGCACAAGTGTTATGGGACTCTGACAATTCGGATGAAGATGGCGGAGGTGGAAAAAATAGTAATGGCAAGCGACAATTGAAATTAAGCAATGTGGGTTTCACCTCATCCAAGAGAGGAAGTGAAGAAATAGAATCTAGTGGTAAAGGACGCTGTAGGTTTTTTCAGGCTCGTAAACTTGAGCACCTCACTAATTTCTAA 897 0.4281 MGSKILPQWASKPCAMGIDEAGRGPVLGPMVYGCLYCAQSYLKTLATLSFADSKTLKEEKREELFEALKTNDSIGWAVDVIDPRELSAKMLKKNKINLNEISHDSAMGLIDRVLKMGVLLTEVYIDTVGDAGKYEMKLSRNFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWVLDETAENMKRDFGSGYPGDPQTKAWLEDHKHRIFGFPTLVRFSWGTCNSYFKDIAQVLWDSDNSDEDGGGGKNSNGKRQLKLSNVGFTSSKRGSEEIESSGKGRCRFFQARKLEHLTNF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03613 298 Gene3D Ribonuclease hii. Domain 2 186 234 IPR023160 GO:0004523
Vimu3g03613 298 SUPERFAMILY Ribonuclease H-like 14 231 IPR012337 -
Vimu3g03613 298 FunFam Ribonuclease 187 234 - -
Vimu3g03613 298 FunFam Ribonuclease 1 185 - -
Vimu3g03613 298 MobiDBLite consensus disorder prediction 255 273 - -
Vimu3g03613 298 PANTHER RIBONUCLEASE H2 SUBUNIT A 4 285 IPR001352 GO:0003723|GO:0004523
Vimu3g03613 298 Gene3D - 1 185 IPR036397 GO:0003676
Vimu3g03613 298 CDD RNase_HII_eukaryota_like 16 232 - -
Vimu3g03613 298 Pfam Ribonuclease HII 16 226 IPR024567 GO:0004523
Vimu3g03613 298 MobiDBLite consensus disorder prediction 242 280 - -
Vimu3g03613 298 NCBIfam ribonuclease HII 16 227 IPR004649 GO:0004523|GO:0016070
Vimu3g03613 298 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Vimu3g03613 298 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 13 235 IPR024567 GO:0004523
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03613 5 298 Core DNA Replication Machinery Family AT2G25100 65.306 6.36e-144 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03613 K10743 - gmx:100779875 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03613 3 48873525 48876643 Vimu3g03613 3 48873525 48876643 ECH