Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03612 TTGCATACAAGTCATTGGATTAGAAAGCATACTGCCAGGTTCACGTGCTGCCAGGTTGAGTATAGCAGTGGAAAACTTTACCTTTATATATATATATATATATATAATTCTCAACTTCAGATTCCTCTCGTGGCTTCTCATCTTGGTCAGATGAGTGTAACTCTTCCAATCCAGTTTTTCAAGATTATTCTTGAAACTAATGGTGAAAGGATAAAAGTACCTAGTAAGTTTACAAGGAAATATGAGAGTTTTCTGCCAAATCCAGTGTCTCTTAGGCTTCCAGATTCAAAGGAATGGGTAGTATATTGGACACAAGAAGATGGTGAGGTTTGGTTAGATAAAGGTTGGAAAGAGTTTACTGAAAATTATTCCTTGAGTTATGGATATTTTGTGATGTTCAAATTCAAAGGAACTTTTCAAATTGATGTGACCATATTTGATCCAAGTGCTGTAGAATTAGATTATTCTTCTTCTGGTAAGAGATCAGTTAACACCATGAATGCAACTCAGATGGGGCAAGAGGCCAGACCAATGCCATCAATGGTCTCTTCTCAACCTTGTGGAAAAACCCAGAATGTGGAAAGAGACGCCAATGTGCAGCAGCAACAAGTGTATGCAGATAAGGGTGGTCGTTCTCATCAAGGGACAAATGTTCGAAAAATAACCAAACAGCAACCAAACTGGGTGAGGTCTACTCAAAGTGGAAAATGTCTGAATAAGCCAAGGTCACTAAAAGCTCAGAAAATAAGCAAGAAATTTAAATCAAAGTATCCTTACTTCACGCTCTTGATAGTGCAGGCTAAGTTGGAAGAAAATGCTATGAAACACGTGCCCAAGTTTTTGAATTGTATGAGTGGCCAGAAGGATGTGATGTTGCAGATGGAGAATAGGGAGTGGTGGGTGAAGTTAATCTGTTGCCGTGAAAAATATGATGTTTTCTCTTCTGGTTGGCCTGAGTTTGCAAAAGAGAGTAATTTGGAAGTTGGTGACGTTTGTGTCTTTGAGTTGATTGATCCTGCAATTCCGCTGCTTCGAGTTCATGTTTTCAAAAGCTAG 1056 0.3873 MHTSHWIRKHTARFTCCQVEYSSGKLYLYIYIYIYNSQLQIPLVASHLGQMSVTLPIQFFKIILETNGERIKVPSKFTRKYESFLPNPVSLRLPDSKEWVVYWTQEDGEVWLDKGWKEFTENYSLSYGYFVMFKFKGTFQIDVTIFDPSAVELDYSSSGKRSVNTMNATQMGQEARPMPSMVSSQPCGKTQNVERDANVQQQQVYADKGGRSHQGTNVRKITKQQPNWVRSTQSGKCLNKPRSLKAQKISKKFKSKYPYFTLLIVQAKLEENAMKHVPKFLNCMSGQKDVMLQMENREWWVKLICCREKYDVFSSGWPEFAKESNLEVGDVCVFELIDPAIPLLRVHVFKS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03612 351 Gene3D - 54 150 IPR015300 -
Vimu3g03612 351 Gene3D - 240 351 IPR015300 -
Vimu3g03612 351 CDD B3_DNA 258 350 IPR003340 GO:0003677
Vimu3g03612 351 PANTHER B3 DOMAIN-CONTAINING 56 339 - -
Vimu3g03612 351 Pfam B3 DNA binding domain 278 349 IPR003340 GO:0003677
Vimu3g03612 351 Pfam B3 DNA binding domain 66 147 IPR003340 GO:0003677
Vimu3g03612 351 SUPERFAMILY DNA-binding pseudobarrel domain 253 350 IPR015300 -
Vimu3g03612 351 SMART B3_2 59 149 IPR003340 GO:0003677
Vimu3g03612 351 SMART B3_2 260 351 IPR003340 GO:0003677
Vimu3g03612 351 CDD B3_DNA 59 147 IPR003340 GO:0003677
Vimu3g03612 351 ProSiteProfiles B3 DNA-binding domain profile. 56 149 IPR003340 GO:0003677
Vimu3g03612 351 ProSiteProfiles B3 DNA-binding domain profile. 260 351 IPR003340 GO:0003677
Vimu3g03612 351 SUPERFAMILY DNA-binding pseudobarrel domain 58 149 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03612 Vimu-Chr3 48869484 48871032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03612 55 350 B3 DNA Binding Superfamily AT3G18990 25.513 1.62e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu3g03612 B3 3.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03612 - - vun:114192490 495.738