Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03607 TTGTTCATTGTTTTCAATTCAACTGAGAACACGACACCCACGATGTTTCACGAGAGCAGCGTGACTCGGTGGCAGCCACAGCCGGTTCAGCCCACTGAGTGGACTCGCTACCACGACAAGCTCTTCGAGCGCGCTCTGCTCCTCGTGCCCGAGGACCTCCCCGACCGCTGGAACCAGATCGCCGTCCACGTTCCGGGCAAAACGCCGGCGGAGGTCAGGGAACACTACGACGCGCTCGTCCACGACGTCTTCGAGATTGACTCTGGCCGAGTCGAGGTCCCGAGTTACGTGGATGACTTGGCGCCACCACAACTCAGTGGCGGTGCCGGGAATTCTGCGTGGGACAGCGCTAATCAGATCTCATTCGGGTCCAAACCTAAGCAGGGCGAGACCGAAAGGAAGAAAGGCACGCCTTGGACTGAAGAGGAACACAGGCTGTTTCTGATCGGGCTGAGCAAATTCGGAAAAGGAGATTGGAGAAGCATTTCAAGAAACGTTGTTGTGACAAGAACACCGACTCAAGTAGCCAGCCATGCTCAAAAATACTTTCTCCGTCAGAATTCTGGGAAGAAGGAGAGGAAAAGATCAAGCATCCATGACATAACCACTGTGGATAGTAACTCTCTGCCTGTGCCCATTGACCAGAACTGGGTTCCTCCACCTGGTACTTCAATGCAGCAGTCACAAGACATGCTGTCGTACGCTTCCAGCAGCATGCATGATCAAATGGGTCCATTTGGGTATTCGAACTATGGCTTTGAAATGTAA 768 0.5339 MFIVFNSTENTTPTMFHESSVTRWQPQPVQPTEWTRYHDKLFERALLLVPEDLPDRWNQIAVHVPGKTPAEVREHYDALVHDVFEIDSGRVEVPSYVDDLAPPQLSGGAGNSAWDSANQISFGSKPKQGETERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSGKKERKRSSIHDITTVDSNSLPVPIDQNWVPPPGTSMQQSQDMLSYASSSMHDQMGPFGYSNYGFEM 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03607 255 CDD SANT 33 76 IPR001005 -
Vimu3g03607 255 Gene3D - 137 188 - -
Vimu3g03607 255 MobiDBLite consensus disorder prediction 107 139 - -
Vimu3g03607 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Vimu3g03607 255 Pfam Myb-like DNA-binding domain 138 183 IPR001005 -
Vimu3g03607 255 SUPERFAMILY Homeodomain-like 28 79 IPR009057 -
Vimu3g03607 255 ProSiteProfiles Myb-like domain profile. 26 80 IPR001005 -
Vimu3g03607 255 CDD SANT 138 183 IPR001005 -
Vimu3g03607 255 FunFam Transcription factor SRM1 27 93 - -
Vimu3g03607 255 SUPERFAMILY Homeodomain-like 132 187 IPR009057 -
Vimu3g03607 255 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 30 250 IPR043363 -
Vimu3g03607 255 FunFam transcription factor MYB1R1 137 188 - -
Vimu3g03607 255 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 186 IPR006447 GO:0003677
Vimu3g03607 255 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Vimu3g03607 255 Gene3D - 30 93 - -
Vimu3g03607 255 ProSiteProfiles SANT domain profile. 134 187 IPR017884 -
Vimu3g03607 255 SMART sant 30 82 IPR001005 -
Vimu3g03607 255 SMART sant 135 185 IPR001005 -
Vimu3g03607 255 MobiDBLite consensus disorder prediction 109 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03607 Vimu-Chr3 48835715 48837201 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu3g03607 Myb_DNA-binding 4.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03607 - - gmx:547481 399.823