Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03601 ATGCTCCCAATCACCTGCATTCTTTTAATGTGCCTTCTAAGTTCTTTCTCACCCCCAATCGAAGCTCTCCTCAACCTCACCGTGCTACCCCACCAACACCCTCACCCCGAAGCCATAGTCCACGAACTTCAACGGAAGCTCAATGTCTCCTTTTCCAGAAGGCAAACACTGTCCAAGGACCAACAACCCGCGTGCCTCACCGGAAACCCAATCGACGACTGCTGGCGCTGCGACACCAACTGGGCGGCGAACCGGCAGAAGCTGGCGGAGTGCGGCGTCGGATTCGGCAAAGACGCCATGGGTGGGAAGGGCGGACAGATCTACGTGGTGACGGACTCGTCGGACCGCGACCCAGCCAACCCCGTCCCCGGCACGCTCCGGCACGCCGTCATCCAAGACGAACCTCTCTGGATCGTGTTCGCCGCGGACATGACCATTAACCTGAAGCACGAGCTCATCTTCAACAGCTTCAAAACCGTCGACGGCCGCGGCGCTAACGTCCACGTCACGGGCCACGGCTGCATCACTCTCCAGTACGTCTCCAACGTCATCATCCACAACATCCACGTCCACCACTGCACGCCCTCGGGGAACACGAACATACGCGCCAGTCCAACGCACGTGGGTTGGAGGGGGAGATCGGACGGCGACGGCATCTCCATCTTCGGCTCCCGGAAGATCTGGATCGACCACTGCTCACTCTCTTACTGCACGGACGGCTTGATCGACGCCATAATGGGTTCCACCGCGATTACTATTTCCAACAACCACTTCGCCCACCACGACGAGGTGATGCTCTTGGGACACAACGATAAGTACTCCCCCGACCGTGGCATGCAGGTCACCATCGCGTTCAATCACTTCGGCGAGGGTTTGGTGCAGCGCATGCCACGTTGCAGGCTCGGCTACATCCACGTCGTCAACAACGATTTCACCCAGTGGCAGATGTATGCCATCGGCGGTAGCGCTAACCCCACCATCAACAGCCAGGGTAACCGTTACACCGCCCCCTCCGACCCCGATGCCAAAGAGGTGACAAAGCGCGTGGACACAGACGACAGAGAGTGGAGTGGGTGGAATTGGAGAACGGAAGGGGACATAATGGTAAATGGTGCATTTTTTGTACCATCGGGTGCAGGGCTCAGTGCACAGTATGCAGAGGCCACCAGTGTGCAACCCAAATCCGCCGTGCAAATTGACCAGCTCACCATGTATTCCGGTGTATTCGGTGATCCCAGGGATAATGGGGATCTGTATCCCGGTTTCAACGGTGGTGGGTCCGTGACCGGAGCCACCAGCAAGGGCAACAGTGCGGCGGGGTCCAGCAGTGACGATGGAGACTTTTTCGGAATGATATTCAGAGGAAGCAGCAGCCGTGCAGCGCCACCGTCATCACCGTCTTCTTTGTTCATTGCATTTGTTTCAACCTTTTTGTCTCTTGTAATTATTCTGATTTTGGACACTTCGACCAACCATCCCATTCTATGA 1488 0.5685 MLPITCILLMCLLSSFSPPIEALLNLTVLPHQHPHPEAIVHELQRKLNVSFSRRQTLSKDQQPACLTGNPIDDCWRCDTNWAANRQKLAECGVGFGKDAMGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLKHELIFNSFKTVDGRGANVHVTGHGCITLQYVSNVIIHNIHVHHCTPSGNTNIRASPTHVGWRGRSDGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPSDPDAKEVTKRVDTDDREWSGWNWRTEGDIMVNGAFFVPSGAGLSAQYAEATSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGSVTGATSKGNSAAGSSSDDGDFFGMIFRGSSSRAAPPSSPSSLFIAFVSTFLSLVIILILDTSTNHPIL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03601 495 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Vimu3g03601 495 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Vimu3g03601 495 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Vimu3g03601 495 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Vimu3g03601 495 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Vimu3g03601 495 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Vimu3g03601 495 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Vimu3g03601 495 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Vimu3g03601 495 SMART amb_all 143 340 IPR002022 -
Vimu3g03601 495 Pfam Pectate lyase 151 332 IPR002022 -
Vimu3g03601 495 Gene3D - 68 410 IPR012334 -
Vimu3g03601 495 PANTHER PECTATE LYASE 18-RELATED 32 409 IPR045032 GO:0030570
Vimu3g03601 495 SUPERFAMILY Pectin lyase-like 56 384 IPR011050 -
Vimu3g03601 495 FunFam Pectate lyase 68 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03601 Vimu-Chr3 48749932 48753296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03601 1 495 Polysaccharide Lyase AT3G53190 60.922 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03601 K01728 - gmx:100808438 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03601 3 48749932 48753296 Vimu3g03601 3 48749932 48753296 ECH