Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03596 ATGGCGATAGGTGCAGCTTCCATGGGTGTGAATGGATGGGGAGACATGAAGAGTCTCACTGTCCAGGTCATCACCGGTCGATGGTTCGTCGTCTTTGCCTCCTTTCTAATCATGGCTGCTGCCGGAGCCACCTACATGTTCGGTCTCTACTCCGGAGACATCAAAGCCACCCTTGGCTACGACCAAACCACTCTCAATCTCCTCAGTTTCTTCAAGGACATGGGCACTAACGTTGGAGTCCTCTCTGGTCTTATCAACGAGCTCACTCCACCTTGGGTGGTGCTAGCCATTGGTGCTCTGCTAAACTTCTTCGGTTACTTCATGATTTGGCTCTCAGTCACCCAGAAAATAGCCAGACCCCAAGTGTGGCAGATGTGTCTCTACATCTGCATAGGTGCTAACTCTCAGTCCTTCGCCAACACCGGTTCCCTAGTCACCTGTGTCAAGAACTTCCCCGAAAGTCGTGGTGTTGTGTTAGGCATCCTCAAAGGCTATGTGGGTCTCAGTGGTGCAATCATCACACAATTGTACTCTGCTATTTACTATGACGACACAAGGGCTTTGATTTTGCTCATAGGTTGGCTTCCAGCTGCTATTTCCTTTGCTTCCCTTCGAACCATTCGCTACATGAAGCCAGTTAGGCAGCCCAATGAGCTCAAGGTTTTCTACAACTTTCTGTATATCTCTCTTGGCCTTGCCGGGTTTCTTTTGGTCATGATTATTATACAGAAAAGGGTCAACTTTACTCAGAGTGAGTACGGTGTGAGCGCCGCTATTGTGATCTTCTTGCTCTTCCTCCCGCTTGCTGTTGTTTCCATCGAAGAATATAAGATCTGGCAGAGTAAAAGGCTTGCTTTGGTGGATCCTTCCCCGGTGAAAATAGTAACCGAGAGTGAAAGGATTAAACCGAATGAGTCTACTAACGGTAGCAATTCAGTGTCAGCAGTTTCCAACGACACCAAGTGGTGGGAAAATGTGTTTAGTCCACCACCAAGAGGTGAGGACTATACGATACTTCAAGCACTATTCAGCATCGACATGTTCCTCTTGTTCATATGTAGCATCTGTGGTATTGGGGGCACGTTGACTGCAATAGATAATCTGGGTCAGATAGGAAAATCGCTTCGATACCCCAAGAAAAGCATAAGCACTTTCGTGTCCCTGGTAAGCATTTGGAATTACCTAGGACGTGTTTTCTCTGGATTTGTTTCTGAACATTTTCTACACAAGTACAAGTTTCCTCGTCCTCTCATGCTTACTTTAACTATGCTGCTGTCATGTGTTGGCCACCTTCTGATAGCATTTGATGTGCCGAATGGCCTTTATGCTGCTTCGGTAATCATAGGGTTTTGTTTTGGAGCTCAGTGGCCGTTACTTTTTGCCATTATATCAGAGCTTTTTGGACTGAAATATTATGCAACTTTGTACAATTTTGGAAGTGCAGCGAGTCCACTGGGGCTATATGTTCTTAATGTGGTGATGACTGGGCATTTGTACGACAAAGAAGCAAAGAAGCAACTGGCAGCGTTGGGGCTTGAAAGAAAGAAAGGGCAAGAATTGAATTGTATAGGGCTTCATTGCTTCAAGTTATCCTTCATCATTATCACAGCTTCAACTTTCTTTGGTGCCATTGTTTCACTGATTTTGGTGGCTAGGACAAGAAAGTTTTACAAAGGTGACATATACAAGAGATTCAGGGATGCAGCCACGGTGTCAGAAACTGAAATGGCAAGCGTGAAGAACGCAAACGGTGCAGAGAAAAATGAGAAACATGTGGTGCCAACTCATCGTCTTGATCAAAACAGCGACTAG 1812 0.4558 MAIGAASMGVNGWGDMKSLTVQVITGRWFVVFASFLIMAAAGATYMFGLYSGDIKATLGYDQTTLNLLSFFKDMGTNVGVLSGLINELTPPWVVLAIGALLNFFGYFMIWLSVTQKIARPQVWQMCLYICIGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYSAIYYDDTRALILLIGWLPAAISFASLRTIRYMKPVRQPNELKVFYNFLYISLGLAGFLLVMIIIQKRVNFTQSEYGVSAAIVIFLLFLPLAVVSIEEYKIWQSKRLALVDPSPVKIVTESERIKPNESTNGSNSVSAVSNDTKWWENVFSPPPRGEDYTILQALFSIDMFLLFICSICGIGGTLTAIDNLGQIGKSLRYPKKSISTFVSLVSIWNYLGRVFSGFVSEHFLHKYKFPRPLMLTLTMLLSCVGHLLIAFDVPNGLYAASVIIGFCFGAQWPLLFAIISELFGLKYYATLYNFGSAASPLGLYVLNVVMTGHLYDKEAKKQLAALGLERKKGQELNCIGLHCFKLSFIIITASTFFGAIVSLILVARTRKFYKGDIYKRFRDAATVSETEMASVKNANGAEKNEKHVVPTHRLDQNSD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03596 603 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 28 562 - -
Vimu3g03596 603 MobiDBLite consensus disorder prediction 582 603 - -
Vimu3g03596 603 CDD MFS_Mch1p_like 26 543 - -
Vimu3g03596 603 MobiDBLite consensus disorder prediction 584 603 - -
Vimu3g03596 603 FunFam Nodulin family protein 338 559 - -
Vimu3g03596 603 Pfam Nodulin-like 27 271 IPR010658 -
Vimu3g03596 603 Gene3D MFS general substrate transporter like domains 340 558 IPR036259 -
Vimu3g03596 603 SUPERFAMILY MFS general substrate transporter 27 556 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03596 Vimu-Chr3 48703057 48704868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03596 5 567 Nodulin-like Gene Family AT2G39210 71.781 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03596 - - pvu:PHAVU_007G024800g 1106.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03596 3 48703057 48704868 Vimu3g03596 3 48703057 48704868 ECH
Vimu6g02473 6 21506589 21508379 Vimu3g03596 3 48703057 48704868 ECH