Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03583 ATGAGTTTCCAAATCAAGAAACCAATATTTTCAGCTATCGTATCAGTATTACTCATTTCAATTACAAAACTCTTCTATTCTTATTTCTCCATACCCTTATTCAATGTTGCCATTCCTATTGCCACGACCCTTTCTGTTATAATCATATGCAAAATTTTCTTAACTTCTAAAACTCACTCTTCCACTCCCCCTGGTCCTCTATCAGTTCCTATATTTGGTAACTGGTTGCAAGTTGGCAATGATCTCAACCACCGTCTTCTAGCGTCAATGTCACAGACCTATGGTCCTGTGTTCCTACTCAAACTAGGTTCCAAAAACTTGGTCGTGGTCTCTGATCCCGAGCTCGCCACCCAAGTGCTCCATTCACAAGGTGTGGAATTTGGCTCGCGCCCACGAAATGTTGTGTTTGATATCTTCACTGGGAACGGCCAAGACATGGTTTTCACTGTTTATGGTGATCACTGGCGCAAAATGCGCAGAATCATGACGCTGCCATTCTTCACCAACAAGGTCGTCCACAACTACAGCAGCATGTGGGAGGAGGAGATGGACTTGGTGGTGCGTGACCTCAACCTGAATGAGAGAGTGAGGAGCGAAGGCATTGTTATCAGAAAGCGGCTTCAGTTCATGCTATACAATATCATGTATAGGATGATGTTTGACGCCAAGTTTGAATCACAAGAGGATCCTTTGTTCATTCAGGCCACGAGGTTTAACTCCGAGAGAAGCCGTTTGGCACAGAGTTTTGAATACAATTATGGGGATTTTATACCATTGCTCAGGCCATTCTTGAGGGGGTACCTAAACAAGTGCAAGGACTTGCAATCTAAGAGGCTTGCATTTTTCAACACCCACTACGTTGAGAAAAGAAGACAAATAATGGCTGCCAATGGGGAGAAACACAAGATCAGCTGTGCTATTGATCACATCATAGATGCACAGATGATGGGAGAAATCAGTGAAGAGAATGTGATATATATAGTAGAAAACATCAACGTTGCAGCAATTGAGACAACATTATGGTCCATGGAATGGGCAATAGCAGAGTTGGTTAATCATCCAAGCGTTCAAAAGAAGATACGTGATGAGATATCAGAAGTGCTTAAAGGGGAGCCAGTGACGGAATCCAACCTTCACGAGCTCCCATACTTACAAGCAACTGTGAAAGAAACACTGAGACTTCACACCCCGATTCCTCTCTTGGTGCCCCACATGAACCTGGAAGAAGCAAAGTTAGGAGGGTACACTATACCAAAGGAGTCCAAGGTGGTGGTGAATGCTTGGTGGCTTGCGAACAACCCATCATGGTGGAAGAATCCAGAGGAGTTCAGGCCGGAAAGGTTTTTGGAAGAGGAGTGTACAACAGATGCTGTTGCAGGAGGAAAGGTTGATTTTAGGTTCGTGCCATTTGGTGTGGGGAGGAGGAGCTGCCCTGGAATCATACTTGCATTACCAATACTTGGACTTGTGATTGCAAAAATGGTGTCAAATTTTGAGCTGAGTGCTCCAGAAGGGACAAAGATAGACGTGAGTGAAAAAGGAGGGCAATTCAGCTTGCACATAGCCAACCACTCCACTGTGTTGTTCCATCCAATTAGAACCCTGTGA 1608 0.444 MSFQIKKPIFSAIVSVLLISITKLFYSYFSIPLFNVAIPIATTLSVIIICKIFLTSKTHSSTPPGPLSVPIFGNWLQVGNDLNHRLLASMSQTYGPVFLLKLGSKNLVVVSDPELATQVLHSQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSSMWEEEMDLVVRDLNLNERVRSEGIVIRKRLQFMLYNIMYRMMFDAKFESQEDPLFIQATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQSKRLAFFNTHYVEKRRQIMAANGEKHKISCAIDHIIDAQMMGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPSVQKKIRDEISEVLKGEPVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPSWWKNPEEFRPERFLEEECTTDAVAGGKVDFRFVPFGVGRRSCPGIILALPILGLVIAKMVSNFELSAPEGTKIDVSEKGGQFSLHIANHSTVLFHPIRTL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03583 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 470 479 IPR017972 GO:0005506|GO:0016705
Vimu3g03583 535 SUPERFAMILY Cytochrome P450 63 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 FunFam Trans-cinnamate 4-monooxygenase 52 526 - -
Vimu3g03583 535 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 PRINTS P450 superfamily signature 468 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 PRINTS P450 superfamily signature 334 351 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 43 532 - -
Vimu3g03583 535 Gene3D Cytochrome P450 54 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 PRINTS E-class P450 group I signature 385 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 PRINTS E-class P450 group I signature 115 136 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 PRINTS E-class P450 group I signature 477 500 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 PRINTS E-class P450 group I signature 426 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 PRINTS E-class P450 group I signature 467 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03583 535 Pfam Cytochrome P450 63 522 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03583 Vimu-Chr3 48615509 48617330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03583 72 531 Monolignol Biosynthesis Gene Families AT2G30490 65.227 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03583 K00487 - gmx:100812188 967.222