Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03577 ATGAAGGTTTTCGTGAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGCAGCCTCAAAACACGGTTTCTGAAGTGAAGAAAAGTATTGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCCCAGCAAATGCTGATTCACCAAGGGAAAGTTCTGAAGGATGCTACTACCTTGGAGGAGAATAACGTAGCTGAAAATAGTTTCATTGTAATTATGTTATCGAAGAGTAAGAGCACTTCTGGTGAAGGATCTACTACAACTGCACCATCCACCAAGACACCACAGACTAGTGCACCTCCTACTTCTACAGCGCCAGTGTCAACAGCTCCTCAAGCTCCAGCTGCAACTGAGGCACAGCCGGCAACTGTTTCTGCACCTGTATCTACACCTTCAGTTCCAGCTCCTGTTTCTATTTCTTCCGGAACTCCTGTGGAGGGGTCTGATATCTATGGGCAGGCGGCATCCAATCTCGTTGCTGGAAGCAATTTGGAGGGAACTATTCAGCAAATTATTGACATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCAGGTATCCCTGAACAAGCTGAAGCTCCACTTGTAGCCAGAGCGCCTGCAGGTGCTCAACCCGCAAATCCTCCTGCCGCTGCTGCCCCACAAACAGCACAACCTGCTCCGGTTACCTCAACTGGGCCTAATGCTAATCCTTTAGACCTTTTTCCGCAGGGCCTTCCCAATGTGGGTTCTGGTGCTGCTGGTGCTGGCTCATTGGATTTTCTACGTAACAGTCAACAATTCCAAGCCTTGCGGGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAGGAACTCGGCAAACAAAATCCTCATCTTATGAGGTTGATTCGAGATCATCAAGCTGATTTCCTTCGCCTGATAAATGAACCCGTGGAAGGTGGCGAAGGGAATATATTGGGACAGTTGGCTGGTGGCATGCCTCAAGCAGTGACTGTCACTCCCGAGGAGCGCCAAGCTATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCGTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCACGAGTTCGATGAACAATAG 1194 0.4832 MKVFVKTLKGTHFEIEVQPQNTVSEVKKSIETVQGADVYPAAQQMLIHQGKVLKDATTLEENNVAENSFIVIMLSKSKSTSGEGSTTTAPSTKTPQTSAPPTSTAPVSTAPQAPAATEAQPATVSAPVSTPSVPAPVSISSGTPVEGSDIYGQAASNLVAGSNLEGTIQQIIDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPLVARAPAGAQPANPPAAAAPQTAQPAPVTSTGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLAGGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDEQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03577 397 Pfam XPC-binding domain 271 326 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vimu3g03577 397 FunFam UV excision repair protein RAD23 homolog 343 391 - -
Vimu3g03577 397 SMART uba_6 164 204 IPR015940 -
Vimu3g03577 397 SMART uba_6 352 389 IPR015940 -
Vimu3g03577 397 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 162 205 IPR015940 -
Vimu3g03577 397 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vimu3g03577 397 CDD UBA1_Rad23_plant 158 207 - -
Vimu3g03577 397 MobiDBLite consensus disorder prediction 219 249 - -
Vimu3g03577 397 Pfam UBA/TS-N domain 167 202 IPR015940 -
Vimu3g03577 397 Pfam UBA/TS-N domain 352 387 IPR015940 -
Vimu3g03577 397 Gene3D - 344 391 - -
Vimu3g03577 397 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 349 390 IPR015940 -
Vimu3g03577 397 CDD Ubl_Rad23 1 74 - -
Vimu3g03577 397 FunFam UV excision repair protein RAD23 homolog 157 207 - -
Vimu3g03577 397 PRINTS DNA repair protein Rad23 signature 363 377 IPR004806 GO:0006289
Vimu3g03577 397 PRINTS DNA repair protein Rad23 signature 297 319 IPR004806 GO:0006289
Vimu3g03577 397 PRINTS DNA repair protein Rad23 signature 378 393 IPR004806 GO:0006289
Vimu3g03577 397 PRINTS DNA repair protein Rad23 signature 346 362 IPR004806 GO:0006289
Vimu3g03577 397 SMART CBM 269 312 IPR006636 -
Vimu3g03577 397 SMART ubq_7 1 75 IPR000626 GO:0005515
Vimu3g03577 397 SUPERFAMILY Ubiquitin-like 1 83 IPR029071 -
Vimu3g03577 397 NCBIfam UV excision repair protein Rad23 1 395 IPR004806 GO:0006289
Vimu3g03577 397 FunFam UV excision repair protein RAD23 1 80 - -
Vimu3g03577 397 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vimu3g03577 397 Gene3D - 157 207 - -
Vimu3g03577 397 SUPERFAMILY UBA-like 161 213 IPR009060 GO:0005515
Vimu3g03577 397 MobiDBLite consensus disorder prediction 79 142 - -
Vimu3g03577 397 FunFam UV excision repair protein RAD23 B 262 327 - -
Vimu3g03577 397 Gene3D - 1 80 - -
Vimu3g03577 397 CDD UBA2_RAD23_plant 348 390 - -
Vimu3g03577 397 SUPERFAMILY UBA-like 333 395 IPR009060 GO:0005515
Vimu3g03577 397 Gene3D - 262 327 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vimu3g03577 397 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 385 - -
Vimu3g03577 397 SUPERFAMILY XPC-binding domain 268 333 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03577 Vimu-Chr3 48582854 48586132 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03577 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 7.03e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03577 K10839 - gmx:100814162 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03577 3 48582854 48586132 Vimu3g03577 3 48582854 48586132 ECH