Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03557 ATGCTTTTGCTGTTGTTCATTGGGAACAGGTGGTCAAAAATTGCTCAGCATCTGCCGGGAAGAACAGACAATGAGATCAAGAATTATTGGAGAACAAGGGTACAGAAGCAGGCACGCCAACTTAACATTGAGTCTGGAAGCAAGAGATTCATTGATGCCGTGAAGTGTTTTTGGATGCCGAGGTTGCTCCAAAAGATGGAACAGAACAATTCTCCGAGTCCTCACTGTTCCATGAATAGCATGGTGAATTTAGGGAATTCTGGAGAAGCTTCTATGAGTTCAACGTCAAGCAGCTTCAATATACCCTCTATGTTTTCATCATCTCCTCCACAAAGGGAATTCATTATGGACGGTGCAAATCATCTCGGTACTATGTCCAACCCCATCAATCCATCCCCAGATTCCTTCCCATATTCACAGCTGCTTGGAATTTCTGAACACCCCAAAAGTCCTCCGAATGTGCTTGAGAACAATGTCTACAGCTATCCAATCCAGGACAACTGCTATGCTGATACCAATAACTATGGCATGGAAGGCCTAAACATGGATCCCCTTTCAGCCATGGGAACTTACGACTTCTCACAGTTTGATTTTCAGAGCGCAGGGAATGGATGGATGTTAGACAGCGTGGAGGATACTACTTTATGGAACATGGATGCTATGTGA 666 0.4429 MLLLLFIGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNNSPSPHCSMNSMVNLGNSGEASMSSTSSSFNIPSMFSSSPPQREFIMDGANHLGTMSNPINPSPDSFPYSQLLGISEHPKSPPNVLENNVYSYPIQDNCYADTNNYGMEGLNMDPLSAMGTYDFSQFDFQSAGNGWMLDSVEDTTLWNMDAM 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03557 221 SUPERFAMILY Homeodomain-like 4 37 IPR009057 -
Vimu3g03557 221 ProSiteProfiles Myb-like domain profile. 1 34 IPR001005 -
Vimu3g03557 221 Pfam Myb-like DNA-binding domain 8 32 IPR001005 -
Vimu3g03557 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 38 IPR017930 -
Vimu3g03557 221 Gene3D - 4 37 - -
Vimu3g03557 221 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 103 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu3g03557 221 CDD SANT 9 32 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03557 Vimu-Chr3 48329572 48330237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03557 2 73 MYB Transcription Factor Family AT1G68320 73.684 3.02e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu3g03557 Myb_DNA-binding 9.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03557 K09422 - gmx:100775834 368.237