Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03541 ATGGCAGCAAGATTCTCTCGCCTTGCTCCTTTTCTGGTTTTTCATTTTCTTCTTCTCACGGTTCAAGGTTCCAGTAACCCAGATTTCGACGCTCTCGTGGCCTTCAAAACCGCTTCAGACACTTCCCAGAAGCTCACTACATGGAACACCAGCAGCACCAGCCCCTGTTCCTGGAGCGGCGTGTCGTGCATTGGCGATCGTGTCTCGCGACTCGTTCTCGAAAACCTCGACCTCCAAGGCTCCATTCATCCCTTGACTTCTCTAACTCAGCTCCGAGTTCTCAGTCTCAAAGGAAACCATTTCTCCGGTCCCGTTCCCGACCTCTCCAACCTCACCGCCCTCAAACTCCTCTTCTTGTCTCGCAACGCCTTCTCCGGCGAGTTTCCGGGGACCGTCACGTCGCTCTTTCGCCTCTACCGACTCGATCTGTCTAACAACAACTTCTCCGGCGAGATTTCGGCGACGGTCTCCCACTTGACCCACCTCCTCACTCTCCGCCTCGACGGGAACAAGTTCTCTGGCCACATTCCTGACTTCAACCTCCCCGACCTCCAAGAATTCAACGTCTCCGGCAACCGCCTCTCCGGCCAGATACCCAAAGCATTATCAAGTTTCCCCGAATCATCGTTCGGGCAAAACCCGTTTCTCTGTGGTGCTCCAGTTAAAAAATGCGCATCCGACCCAACAAAACCCGGATCAGAAGGCGCCATTGCTTCGCCGTTGTTACCACAGAACCATAACAACCCAACACCTACGGTATCATCTTCACCAAGCTCAATGCCAAAAATGTCAACACCAACGTCAAGTAGTAAAAGCCACGAGAAGGGTGCTTCTAAAATAAGCCCGGTGGCGCTTATAGCTATTATAGTTGGTGATGTTTTGGTTCTTGCAATAGTGTCTTTGCTTTTGTATTGTTACTTCTGGAGAAACTACAAGTTAAAAGAAGGGAAGGGCACGAAGCTTTTTGAGAGTGAGAAGATTGTGTATTCGTCAAGTCCGTACCCTGCTCAGGGAGGGTTCGAAAGGGGTCGCATGGTTTTCTTCGAGGGTGAGAAAAGGTTTGAACTTGAGGACTTGCTGCGAGCATCTGCGGAAATGCTTGGAAAGGGAGGGTTTGGGACCGCGTACAAGGCAGTGCTCGATGATGGGAACGTGGTTGCGGTGAAGAGACTGAAGGACGCACAGATTACAGGGAAGAGGGAATTCGAGCAACACATGGAGGTGTTGGGAAGGTTAAGGCATCCAAATGTCGTTAGTTTGAGAGCTTACTATTTTGCGCGCGAGGAGAAGTTGCTGGTCTATGATTACATGCCCAATGCCACCTTGTTCTGGCTCCTTCACGGGAACCGAGGACCCGGACGAACCCCACTGGACTGGACCACGAGGCTGAAAATAGCAGCGGGAGCGGCGAGAGGTGTGGCTTTCATTCATAACTCGTGCAAGTCCATTAGACTCACCCACGGTAACATCAAATCCACCAACGTCTTACTCGACAAGCAGGGCAACGCGCACGTGTCTGATTTTGGGCTCTCGGTTTTCGCCGGGCCAGGCCCATTGGGTGGGAGGCCCAACGGCTATCGCGCGCCGGAAGCATCGGATGGTCGAAAACAGACCCAGAAGTCTGACGTGTACTCTTTCGGTGTGCTCCTGCTGGAGATTCTAACCGGGAAGTGCCCCTCCGTGGTGGAGAGTGCAGGTAGTGCTTATGGTGGGGTGGTGGACCTGCCGAGGTGGGTCCAGTCAGTGGTGAGGGAAGAATGGACCGCTGAAGTGTTTGATTTGGAACTGATGAGGTATAAGGATATTGAGGAGGAGATGGTGGGGCTGCTTCAGATTGCGATGACGTGTACCGCGGCTGCACCTGATCAACGGCCCAGGATGAGCCACGTGGTGAAGATGATTGAGGAGTTGCGTGGGGTCGAGGTGTCGCCGTGTCATGACTCGGCGGACTCTGTTTCCGAGTCACCCTCCATGTCTGAAGATGCGTGTGGAACGAGTCAGTGA 2004 0.5314 MAARFSRLAPFLVFHFLLLTVQGSSNPDFDALVAFKTASDTSQKLTTWNTSSTSPCSWSGVSCIGDRVSRLVLENLDLQGSIHPLTSLTQLRVLSLKGNHFSGPVPDLSNLTALKLLFLSRNAFSGEFPGTVTSLFRLYRLDLSNNNFSGEISATVSHLTHLLTLRLDGNKFSGHIPDFNLPDLQEFNVSGNRLSGQIPKALSSFPESSFGQNPFLCGAPVKKCASDPTKPGSEGAIASPLLPQNHNNPTPTVSSSPSSMPKMSTPTSSSKSHEKGASKISPVALIAIIVGDVLVLAIVSLLLYCYFWRNYKLKEGKGTKLFESEKIVYSSSPYPAQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQITGKREFEQHMEVLGRLRHPNVVSLRAYYFAREEKLLVYDYMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSIRLTHGNIKSTNVLLDKQGNAHVSDFGLSVFAGPGPLGGRPNGYRAPEASDGRKQTQKSDVYSFGVLLLEILTGKCPSVVESAGSAYGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMTCTAAAPDQRPRMSHVVKMIEELRGVEVSPCHDSADSVSESPSMSEDACGTSQ 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03541 667 MobiDBLite consensus disorder prediction 228 275 - -
Vimu3g03541 667 MobiDBLite consensus disorder prediction 240 275 - -
Vimu3g03541 667 MobiDBLite consensus disorder prediction 648 667 - -
Vimu3g03541 667 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Vimu3g03541 667 MobiDBLite consensus disorder prediction 644 667 - -
Vimu3g03541 667 FunFam pollen receptor-like kinase 1 334 436 - -
Vimu3g03541 667 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 639 IPR046959 -
Vimu3g03541 667 Gene3D Phosphorylase Kinase; domain 1 341 436 - -
Vimu3g03541 667 Gene3D Transferase(Phosphotransferase) domain 1 437 653 - -
Vimu3g03541 667 CDD STKc_IRAK 367 637 - -
Vimu3g03541 667 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Vimu3g03541 667 SUPERFAMILY Protein kinase-like (PK-like) 365 634 IPR011009 -
Vimu3g03541 667 Gene3D Ribonuclease Inhibitor 113 226 IPR032675 -
Vimu3g03541 667 Pfam Protein tyrosine and serine/threonine kinase 365 633 IPR001245 GO:0004672|GO:0006468
Vimu3g03541 667 ProSiteProfiles Protein kinase domain profile. 361 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03541 667 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 437 644 - -
Vimu3g03541 667 SUPERFAMILY L domain-like 37 221 - -
Vimu3g03541 667 Gene3D Ribonuclease Inhibitor 20 112 IPR032675 -
Vimu3g03541 667 FunFam Leucine-rich repeat receptor-like protein kinase 25 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03541 Vimu-Chr3 48190737 48193454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03541 28 667 Receptor kinase-like Gene Family AT1G68400 67.173 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu3g03541 PK_Tyr_Ser-Thr 9.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03541 - - vum:124834036 1286.94