Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03539 ATGGTCAAGATCTACTGTACAAGAAGGAAGAAGAAAAATCCAACAAATCAACGGATTGAGGTCTTTCTGAAAAAACATGGAGCCCTTCAGACTAAGAGGTATGGTTATTCCGAGATAAAGAGAGTGACCAACTGTTTCAGAAACAAACTAGGCCAAGGAGGATTCGGTAGTGTATACAAGGGAATATTACAGGATGGACGTTACGTTGCTGTGAAGATCCTAAACGAATTAAAAGATGACGGAGAAGAATTCATCAATGAAGTTGCTAGTATTAGCAGAACTTCTCATATTAACATTGTTACGCTTTTGGGGTTCTGTTGCGATGGTTCTAAACGAGCTTTGGTTTATGAGTTTATGTGTAATGGATCACTTGAAAAACTTATCTGTCAAGAAAATGATCTAATCACACATCATCAATTGGACTATCAAATGTTGTATCATATTGCAATTGGTGTTGCTAGAGGACTAGAATACTTGCACAAAGGCTGCAATACTAGAATTTTACACTTTGACATCAAACCTCATAACATTCTGTTGGATGAGAATTTCAATCCCAAGATTTCAGATTTTGGTCTGGCAAAAATTTGCTCCCGAAAAGAAAGTATGGTGTCAATATTTGGTGCTAGAGGAACAGCAGGCTATATTGCTCCAGAAGTTTTTTCTAGAAATTTTGGTGTAGTATCACATAAATCAGATGTTTACAGTTATGGAATGATGATCTTAGAAATGATTGGAGGAAAGAAGAACACTATAACTGGGCTAGACCCCTCAAGCGAAATATACTTTCCCGATTGGATATACAATCGTATTGAATCAAAGCAAGAACTTGGTTTACAAAACATGCGAAATATAAGTGATGAAAAATTGGTAAGAAAGATGGCAATTGTGGGCTTATGGTGCATACAAACTCATCCTTCAGTCCGACCTGCCATAAGTAAAGTGTTGGAAATGCTAGAAAGCAAAGTAGAGTTATTGCAAATTCCACCTAAACCTGTATTGTCTTCTCCTTCCACTTCTCCCATCCATTTATCAAGTGAGACATTGTAA 1047 0.3687 MVKIYCTRRKKKNPTNQRIEVFLKKHGALQTKRYGYSEIKRVTNCFRNKLGQGGFGSVYKGILQDGRYVAVKILNELKDDGEEFINEVASISRTSHINIVTLLGFCCDGSKRALVYEFMCNGSLEKLICQENDLITHHQLDYQMLYHIAIGVARGLEYLHKGCNTRILHFDIKPHNILLDENFNPKISDFGLAKICSRKESMVSIFGARGTAGYIAPEVFSRNFGVVSHKSDVYSYGMMILEMIGGKKNTITGLDPSSEIYFPDWIYNRIESKQELGLQNMRNISDEKLVRKMAIVGLWCIQTHPSVRPAISKVLEMLESKVELLQIPPKPVLSSPSTSPIHLSSETL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03539 348 Gene3D Transferase(Phosphotransferase) domain 1 119 334 - -
Vimu3g03539 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vimu3g03539 348 PANTHER RUST RESISTANCE KINASE LR10-RELATED 16 335 IPR045874 GO:0004672
Vimu3g03539 348 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Vimu3g03539 348 FunFam S-receptor-like serine/threonine-protein kinase 10 118 - -
Vimu3g03539 348 SMART serkin_6 44 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03539 348 Gene3D Phosphorylase Kinase; domain 1 4 118 - -
Vimu3g03539 348 FunFam PR5-like receptor kinase 119 330 - -
Vimu3g03539 348 Pfam Protein kinase domain 48 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03539 348 ProSiteProfiles Protein kinase domain profile. 44 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03539 348 SUPERFAMILY Protein kinase-like (PK-like) 27 319 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03539 Vimu-Chr3 48183722 48184768 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03539 27 348 Receptor kinase-like Gene Family AT5G38260 55.046 6.28e-124 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu3g03539 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03539 - - gmx:100786495 582.793