Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03537 ATGGCTATCGTAGATTTGTTCAACTTCCTCTTGTTTTATCACCTTGTACTCATCCTCTGTGCTGGTTATGGATATGGGCACCAAGGTTGTCCACACTCCTTTACTTGTGGCAATCTTGGGTCTTTCCATTACCCTTTTACCAAGGCAGAACAACCAGACTGTGGCTTGATACCTATACATGGTTGTGATAATCCTCTATCAATCCAAAAACTGATCCAGCTGGAGAAAAATGGAAAATACTTTGTGCTTACAGGCAACATTCAGCAGGATGGGATTTCAATTTCGGATGAAGATTTGCACCAGCGTTTACAAAACAACATCTGTGACACTTTGAATAATAGCTACAGTCTTCAATCCCATTCTCCTTTATACTCTTATTATATAAAATATAATGTGACACTGTTCCGATGCAAACATGACCTCAATATGAAACCCCCACCACATTATTTTACTCACTCCTGCACTGAGTATGGCTACGATATCTATTATGACAGCCTTTCCTTACCTAAGAATGATGAGGCTCATGAACTTTTCTCATCCTGCTCAGTTCTTCACTTATCAAAAAAGGACAAGGCCGATACCACAGACATTCTATCGTTTTTATCTGCTCAGATGACTGTTCAAGTAGTATTATCTAAGGATTGTGATGAGTGCTATAATCTCAGAGAAGGTCAATGTCGTCTTGACCGCGATCATCAGTTCTACTGTCACAAAGAGAAATCCCGAAAGAAGATTCCGGTTATGGCAACAGGTAGAACACTAAATACTCGATTATCATTTTGTTTGGATCGACCACAGTCTACAAATTACCAATTCTCTAAAACTGGATCTTCTGCCTTGGTAGTAGCTGGAGTCGTAGTTTTACTGATGGTCCTGGCATGCTGCTTCAGGACAAATATCATCTCTGCTATTACTATTTTGTTTCCAAGGGATCCAACCCATCGGATTATTGAGGGATTTCTGAAGGAGCACGGACCCCTCCCTACGGCCAGGTATAGTTATTCGGAGGTTAAGAAAATGACAAACTCTTTCAGAAACAAATTAGGCCAAGGGGGATTCGGTAGTGTATATAAAGGGAAATTACACGACAGACATGTTGCGGTGAAGCTTTTAAATAGATCAGAAGGCAATGGAGAAGAATTCATCAATGAAGTGGCAAGTATCAGCAGGACTTCACATGTTAACGTTGTTAGGCTTTTGGGGTTTTGTTTGGATAAGTCTAAACGGGCTCTAATATACGAGTTTATGTCTAATGGATCTCTAGATAAGTTTATATATGATGACAAAAGTTCAAAGCGGGCTTCTTGCCAATTGGATTACGAAATACTATATGATATTGCAATTGGCATTGCTCGTGGATTAGAGTACTTACACAGAGGTTGCAACACTAGAATTTTGCATTTTGACATAAAACCTCACAACATATTACTGGATGATGATTTCTGCCCAAAAATATCAGATTTTGGACTTGCAAAACTGTGTCCAAGAAAAGAAAGTGCTGTGTCAATATTTGGTGCAAGAGGAACTGCAGGGTATATTGCTCCAGAAGTATTTTCCAGAAACTTTGGTGCAGTGTCGCATAAATCAGACGTCTACAGTTATGGAATGATGGTCATAGAAATGGTTGGAATGAAACATAATTTTAAGGCTAAAGTAAACTGTTCGAGTGAAATATATTTTCCTCAGTGGATTTACAATTTTCTTGAATCAGATCAAGAGCTTCGTTTAGAAAATATGATAAATGAAAATGATGACAAAATATTGAGAAAAATGTCAATAGTAGGTTTATGGTGCATCCAAACCTATCCTTCAACTCGTCCAGCCATAAGTAGAGTAGTGGAAATGTTAGAAAGTAAAGTTGAGTTACTGCAAATTCCACCCAAACCATTTTTATCAGATCCTTCTCCAGTCAACTTGTCAGGTGGGACATTATAA 1935 0.385 MAIVDLFNFLLFYHLVLILCAGYGYGHQGCPHSFTCGNLGSFHYPFTKAEQPDCGLIPIHGCDNPLSIQKLIQLEKNGKYFVLTGNIQQDGISISDEDLHQRLQNNICDTLNNSYSLQSHSPLYSYYIKYNVTLFRCKHDLNMKPPPHYFTHSCTEYGYDIYYDSLSLPKNDEAHELFSSCSVLHLSKKDKADTTDILSFLSAQMTVQVVLSKDCDECYNLREGQCRLDRDHQFYCHKEKSRKKIPVMATGRTLNTRLSFCLDRPQSTNYQFSKTGSSALVVAGVVVLLMVLACCFRTNIISAITILFPRDPTHRIIEGFLKEHGPLPTARYSYSEVKKMTNSFRNKLGQGGFGSVYKGKLHDRHVAVKLLNRSEGNGEEFINEVASISRTSHVNVVRLLGFCLDKSKRALIYEFMSNGSLDKFIYDDKSSKRASCQLDYEILYDIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDDDFCPKISDFGLAKLCPRKESAVSIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMVIEMVGMKHNFKAKVNCSSEIYFPQWIYNFLESDQELRLENMINENDDKILRKMSIVGLWCIQTYPSTRPAISRVVEMLESKVELLQIPPKPFLSDPSPVNLSGGTL 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03537 644 PANTHER RUST RESISTANCE KINASE LR10-RELATED 314 631 IPR045874 GO:0004672
Vimu3g03537 644 FunFam serine/threonine-protein kinase PBS1-like 320 415 - -
Vimu3g03537 644 ProSiteProfiles Protein kinase domain profile. 342 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03537 644 FunFam PR5-like receptor kinase 416 628 - -
Vimu3g03537 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Vimu3g03537 644 Gene3D Phosphorylase Kinase; domain 1 322 415 - -
Vimu3g03537 644 Gene3D Transferase(Phosphotransferase) domain 1 416 624 - -
Vimu3g03537 644 Pfam Protein kinase domain 346 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03537 644 ProSitePatterns Protein kinases ATP-binding region signature. 348 369 IPR017441 GO:0005524
Vimu3g03537 644 SUPERFAMILY Protein kinase-like (PK-like) 326 617 IPR011009 -
Vimu3g03537 644 SMART serkin_6 342 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03537 Vimu-Chr3 48173280 48175617 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03537 7 631 Receptor kinase-like Gene Family AT1G66910 37.405 3.58e-127 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu3g03537 Pkinase 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03537 - - gmx:100784387 834.713