Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03536 ATGCCACTTCTCTTGGCGGCCGGGGACCATGGAAGGTGTCCACCTTCATTTCCCTGTGGATATCTTGGCAATATCACTTACCCTTTTACTATAACTGGACGCCGCGACTGTGGCTTCTTGTCCATACGAAATTGTAGTGATGATCCACATACGCCCAAATATATCCAATTACAACCAAATGGAGGTTGGGTTCAGGTTGTAACCACATATCCGCTTCTTAGTAGCCCTACTATCCGTTTCGCAACTTTTCAATTTAGAGACAAACATTTTTATGACCTTCTGCAGAGCCAAAGTTGTGAAGCTTTCACAAACAGTTACACTCTTCCTCTTATTTCTCACTTTGCTGCTTTTAGTTTGGCACACAAAGCATGTCTGTTCTTGTGCAACAAGACCTTCAATGTCACAAATATAAATATGAGCAAGTATAATGGGTGCCTTGGCTACGATATCTACTACGACCACTTCATTACAGACGAGGATGCGTCTCGGAGTTCTTTGAAAGCGTGTAAAAAGGTCCTGCTTCCAATTAAAGACTTGCCTGACGCCAATGACCCATTTACTTTCGTAACTGGCGATGTCACTGTTACAGTAACATTAACAGATCAATGTTCAGATTGCTACTATCGCAAAAGAGGGCAGTGTCAACTTGACAGCAGAGAGCAATTTTGTTGTGCCTACAGTTACGCTTACGAGGAAACCAGAAAGAAGATGTGGAAGGTGGCAACAGCTTCGACCGTGGCGGCTGCTGTACTCGTAGTGCTGATGGTCTTGGTTTGCTGCTTCAGGACAAAAATCTTCTATCCTTTGTTTTGGAAGGAAAATCCGACTCATCGCGTTATTGAGGACATTTTGAAGGAACAGGGACCCCTTACCACAGTCAGGTTCAGTTATTTAGAGGTTAAGAAAATGACCAACTCTTTCAGAAACAAATTAGGACAAGGGGGATTTGGTAGCGTGTACAAAGGGAAATTACATGATGGAAGTTTTGTTGCAGTAAAAATTTTAGCTGTATCTAAAGGCAACGGAGAAGAATTCATCAATGAAGTTGTGAGTATTAGTAGGACTTCACATGTTAATATCATTAGACTTTTAGGATTTTGTTTTGACAATACTCACCGGGCTCTAATATACGAGTTTATGCCTAATGGATCTCTTGACAAGTTCATCTATGAAGACAAAAATGCATCAAAGGATGTTCACCATCTGGATTGGAAAATATTGAATGATATTGCAATTGGCATTGCCCGTGGATTAGAGTACTTATACAGAGGCTGCAACACTAGAATTTTACATTTTGACATAAAACCTCACAACATATTACTGGACGAGGATTTCTGTCCAAAAATTTCAGATTTTGGACTTTCAAAAGTATGTCCTAGAAAAGAAAGTATGGTATCCATATTTGGTGCCAGAGGAACTGCAGGATATATTGCTCCAGAGGTTTTTTCCAGAAACTTTGGTGCTGTGTCACACAAGTCAGATGTTTATAGTTATGGAATGATGATCTTAGAAATGGTTGGAAGAAGAAAGAATATTAAGACAAAAGTAGACCGGTCGAGTGAAATATACTTTCCTCATTGGATTTATAGTCGTCTTGAATCAAATTCAGAGCTTGGTTTAGAAAATGTGAGAAATGAAAGTGAGGATGAAATGGTGAGAAAGATGACAATAGTGGGCTTGTGGTGCATTCAAACTCATCCTTCAACTCGACCAACCATAAGCAAAGTGACGGAAATGTTAGAAAGTAAAGTTGGTTTATTGCAAATTCCACCAAAACCATTTTTGTCTTCTCCTTCGCCATCGCCGACCAATTTGTCATATGAAAGTTTTAGTTTATAA 1839 0.397 MPLLLAAGDHGRCPPSFPCGYLGNITYPFTITGRRDCGFLSIRNCSDDPHTPKYIQLQPNGGWVQVVTTYPLLSSPTIRFATFQFRDKHFYDLLQSQSCEAFTNSYTLPLISHFAAFSLAHKACLFLCNKTFNVTNINMSKYNGCLGYDIYYDHFITDEDASRSSLKACKKVLLPIKDLPDANDPFTFVTGDVTVTVTLTDQCSDCYYRKRGQCQLDSREQFCCAYSYAYEETRKKMWKVATASTVAAAVLVVLMVLVCCFRTKIFYPLFWKENPTHRVIEDILKEQGPLTTVRFSYLEVKKMTNSFRNKLGQGGFGSVYKGKLHDGSFVAVKILAVSKGNGEEFINEVVSISRTSHVNIIRLLGFCFDNTHRALIYEFMPNGSLDKFIYEDKNASKDVHHLDWKILNDIAIGIARGLEYLYRGCNTRILHFDIKPHNILLDEDFCPKISDFGLSKVCPRKESMVSIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMILEMVGRRKNIKTKVDRSSEIYFPHWIYSRLESNSELGLENVRNESEDEMVRKMTIVGLWCIQTHPSTRPTISKVTEMLESKVGLLQIPPKPFLSSPSPSPTNLSYESFSL 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03536 612 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
Vimu3g03536 612 ProSiteProfiles Protein kinase domain profile. 305 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03536 612 SMART serkin_6 305 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03536 612 Gene3D Phosphorylase Kinase; domain 1 281 379 - -
Vimu3g03536 612 PANTHER RUST RESISTANCE KINASE LR10-RELATED 277 599 IPR045874 GO:0004672
Vimu3g03536 612 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Vimu3g03536 612 SUPERFAMILY Protein kinase-like (PK-like) 287 581 IPR011009 -
Vimu3g03536 612 FunFam PR5-like receptor kinase 380 592 - -
Vimu3g03536 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Vimu3g03536 612 FunFam serine/threonine-protein kinase PBS1-like 276 379 - -
Vimu3g03536 612 Pfam Protein kinase domain 309 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03536 Vimu-Chr3 48168594 48170886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03536 294 596 Receptor kinase-like Gene Family AT4G18250 58.521 6.67e-124 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu3g03536 Pkinase 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03536 - - gmx:100783861 762.296