Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03531 ATGGGTCATATTTGGGTTAAGTATGCTCAATCGAGAAACATTTATGGTGATTCCTTCCAAAATCCAGACACAGAGATTGACATGATCTTCTTTGGGGTACCCGTCTTCTCGTATAAGGAGCTTCAAGAAGCAACCAACAATTTTGACTCCACTAGAAAGCTCGGAGATGGAGGCTTTGGCATTGTTTACCACGGGACACTGAGAGATGGAAGGGAAGTTGCAATCAAACATCTGTTTGAGCACAATTACAAGAGAGTGGAACAGTTTATGAATGAAATCGAGATCCTTTCTCGCTTGCGCCACAGAAATCTCGTGTCCCTTTATGGCTGCACTTCACGTCACGCCCAAGAGCTGTTGCTTGTCTATGAGTACATTCCAAATGGCACAGTTGCTAGCCATCTCCATGGTGAATTAGCTAGAGTTGGTTTGCTGACATGGCCTATTCGAATGCAAATTGCCATAGACACTGCTACTGCACTCTCCTATCTCCATTCTTCTAACATCATTCACCGTGATGTGAAAACCAATAACGTTCTGCTTGACATTAATTTTTCCGCTAAGGTGGCAGATTTTGGGCTTTCAAGATTGTTCCCCAATGATGTAAGTCACGTGTCCACAGCTCCGCAGGGATCTCCGGGATATCTTGATCCTGAATATTTTCAATGTTACAGGCTCACCGATAAGAGTGATGTGTATAGCTTTGGGGTTGTGTTAATGGAGCTAATATCATCCATGCCAGCGGTTGATGCAGCCAGGGAAAGGGATGAAGTTAACTTAGCAAATTTTTTCATGAAAAGGATTCAAAAAGGAAAGCTTCGTGAGCTTGTAGACCCATCCTTTGGATTTGAGTCAGACCAAGTCCTTAAAAGGATGGTGACTTCAGTAGCAGAATTGGCCTTTCGGTGTGTGCAGGGAGACAACGAATTGAGGCCTTCTATGGACCAAGTTCTGGAATTCCTCAAGAAAATCCAAAGTGGGAATTATGAGTCTGAGAATCCGGAGAAAGGAGATCACGGTGGTAATGTAATCTCGTCTACCTCAACGGAAGAAGTGCAACCACCACCGTCAGTTTCACGGAATTCGGGTCAAATTGAAATTTTAATGAATAATAAGCTTTCTTCGCCAAGGTCCTTCACCGATAAATGGGAAAATGAATCTACCACGCCCAATGTCAGTGGTTAA 1182 0.4349 MGHIWVKYAQSRNIYGDSFQNPDTEIDMIFFGVPVFSYKELQEATNNFDSTRKLGDGGFGIVYHGTLRDGREVAIKHLFEHNYKRVEQFMNEIEILSRLRHRNLVSLYGCTSRHAQELLLVYEYIPNGTVASHLHGELARVGLLTWPIRMQIAIDTATALSYLHSSNIIHRDVKTNNVLLDINFSAKVADFGLSRLFPNDVSHVSTAPQGSPGYLDPEYFQCYRLTDKSDVYSFGVVLMELISSMPAVDAARERDEVNLANFFMKRIQKGKLRELVDPSFGFESDQVLKRMVTSVAELAFRCVQGDNELRPSMDQVLEFLKKIQSGNYESENPEKGDHGGNVISSTSTEEVQPPPSVSRNSGQIEILMNNKLSSPRSFTDKWENESTTPNVSG 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03531 393 PIRSF TyrPK_CSF1-R 143 387 - -
Vimu3g03531 393 PIRSF TyrPK_CSF1-R 45 141 - -
Vimu3g03531 393 Gene3D Transferase(Phosphotransferase) domain 1 125 346 - -
Vimu3g03531 393 SUPERFAMILY Protein kinase-like (PK-like) 32 332 IPR011009 -
Vimu3g03531 393 FunFam receptor-like protein kinase FERONIA 17 124 - -
Vimu3g03531 393 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Vimu3g03531 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vimu3g03531 393 FunFam Wall-associated receptor kinase-like 20 125 333 - -
Vimu3g03531 393 CDD STKc_IRAK 54 323 - -
Vimu3g03531 393 ProSiteProfiles Protein kinase domain profile. 48 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03531 393 MobiDBLite consensus disorder prediction 339 393 - -
Vimu3g03531 393 Gene3D Phosphorylase Kinase; domain 1 20 124 - -
Vimu3g03531 393 MobiDBLite consensus disorder prediction 327 393 - -
Vimu3g03531 393 SMART serkin_6 48 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03531 393 Pfam Protein tyrosine and serine/threonine kinase 51 320 IPR001245 GO:0004672|GO:0006468
Vimu3g03531 393 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 387 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03531 Vimu-Chr3 48139434 48140743 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03531 23 393 Receptor kinase-like Gene Family AT1G25390 58.981 9.69e-155 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu3g03531 PK_Tyr_Ser-Thr 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03531 - - gmx:100789176 630.172