Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03529 ATGGCAGGTATAGGTGCTGGACTGTGCAATGTAATAACATTGGTGTTGATCCTCACATTACGGCGCTGTAAATATGGTGGTGCACTGGCTCTGTTCCGATCAAGAAATGGAGCCGACATAATGACAGATAGGATCTTCTTTGGAGTACCCGTCTTCTCTTATAAGGAGCTTCAAGAAGCAACAAACAATTTTGACCGCAACAGAAAGCTAGGGGAGGGAGGATTTGGAAGCGTTTACTATGGTAAGCTCGAAGATGGACGGGAAGTTGCAGTGAAATTGTTCTCCGAGCACAACTACAGGAGAGTGCAACAATTTATGAATGAAATTGAGATTCTCACTCACTTGCGACACAGGAACCTCGTCTCCCTCTACGGTTGCACTTCGCGTCACAGCCGTGAGTTACTGCTTGTGTACGAATACGTCCCAAACGGCACTCTTGCTTGCCACCTCAACAGAAGGGACAAGTTGCTGACGTGGCCGATTCGGATGCAAATTGCGGTGGAGACCGCCACTGCCTTGGCTTATCTTCACGCTTCCGACATCATTCACCGTGACGTGAAAAGCAGCAACATTCTACTTGACACGAATTTTTTGGTTAAGGTGGCCGATTTTGGACTTTCGAGGTTGATTCCGACCGATGCAAGCCACGTGTCAACCGGTCCGCAGGGGACTCCGGGGTACCTTGACCCTGAGTATTTCCAGCACTACCAGCTGACGGACAAGAGTGATGTATTTAGCTTTGGGGTTGTGGTTGCTGAGCTGATATCGTCGTTGCCTGCGGTCGATGCCGGCAGGAAAAGTGATGAGATAAACTTGGTGAGTCTTGCCATAAAGAAGATTCAAAATGGGAAACTCAGTGAGTTGGTGTGCGAATCGCTTGGCTTTGAGTCAAACGAAGAAGTGAGAAGGATGGTGAATTCAGTGGCGGAATTGGCCTTCCTGTGTGTACAAGGAGACAGGCAATTAAGACCTTCCATGGATGAAGTTGTGGAAGCACTGCGGAAAATTCAAGCTGGGATTGGTGAGTGCGACATGTAG 1038 0.4846 MAGIGAGLCNVITLVLILTLRRCKYGGALALFRSRNGADIMTDRIFFGVPVFSYKELQEATNNFDRNRKLGEGGFGSVYYGKLEDGREVAVKLFSEHNYRRVQQFMNEIEILTHLRHRNLVSLYGCTSRHSRELLLVYEYVPNGTLACHLNRRDKLLTWPIRMQIAVETATALAYLHASDIIHRDVKSSNILLDTNFLVKVADFGLSRLIPTDASHVSTGPQGTPGYLDPEYFQHYQLTDKSDVFSFGVVVAELISSLPAVDAGRKSDEINLVSLAIKKIQNGKLSELVCESLGFESNEEVRRMVNSVAELAFLCVQGDRQLRPSMDEVVEALRKIQAGIGECDM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03529 345 FunFam Wall-associated receptor kinase-like 20 141 344 - -
Vimu3g03529 345 Gene3D Phosphorylase Kinase; domain 1 41 140 - -
Vimu3g03529 345 SUPERFAMILY Protein kinase-like (PK-like) 49 336 IPR011009 -
Vimu3g03529 345 Pfam Protein tyrosine and serine/threonine kinase 67 333 IPR001245 GO:0004672|GO:0006468
Vimu3g03529 345 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 44 140 - -
Vimu3g03529 345 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 339 IPR044652 GO:0004672
Vimu3g03529 345 SMART serkin_6 64 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03529 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Vimu3g03529 345 ProSiteProfiles Protein kinase domain profile. 64 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03529 345 PIRSF ILK 50 344 - -
Vimu3g03529 345 ProSitePatterns Protein kinases ATP-binding region signature. 70 92 IPR017441 GO:0005524
Vimu3g03529 345 Gene3D Transferase(Phosphotransferase) domain 1 141 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03529 Vimu-Chr3 48133019 48134134 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03529 3 343 Receptor kinase-like Gene Family AT1G25390 60.807 3.27e-147 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu3g03529 PK_Tyr_Ser-Thr 1.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03529 - - gmx:100789695 527.324