Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03527 ATGAAAGTGGCCATTGAGACTGCTACTGCATTGGCCTATCTCCATGCCTCTGACATCATTCACCGAGATGTCAAAACCAGCAACATTCTGCTTGACGACACTTTCTGTGTTAAAGTTGCCGATTTTGGATTGTCGAGACTGTTCCCGGTTGATGTCACCCATGTTTCCACTGCTCCACAAGGCACCCCTGGCTATGTTGATCCTGAATATCACCGCTGCTACCAACTTACCAACAAGAGTGATGTGTATAGTTTTGGGGTTGTGCTTATTGAACTAATATCATCTATGCCAGCAATTGATCTGAACCGACATAAGGATGAAATAAACTTGGCAGATCTAGCAGTAAGGAAGATTCATAAAAATGCAATTGCTGAGCTGGTGGATCCTTCCCTTGGTTTTGAGTCAAATGATGATGTTAAAAGACAAATCATTGCAGTAGCAGAATTGGCTTTTCAATGCTTGCAACAGGACAAAGAGTTGAGACCCTCCATGGATGAAGTGTTGGAGGTGCTGAAAAGAATAGAAAGTGGGAAGGATGAAGCAGGGCATGCTCAGGATGAAGAGCCATCATCACCATCTTCAGTAGATCATGATGAAGTGAAATTGTTGATGAATATGAAGTTGCCACCTTCGCCAAGGGCCGTGACAGATAAATGGAACTGTCGCTCTACCAGTCCTAATGTTAGTGGTCAATAA 696 0.4339 MKVAIETATALAYLHASDIIHRDVKTSNILLDDTFCVKVADFGLSRLFPVDVTHVSTAPQGTPGYVDPEYHRCYQLTNKSDVYSFGVVLIELISSMPAIDLNRHKDEINLADLAVRKIHKNAIAELVDPSLGFESNDDVKRQIIAVAELAFQCLQQDKELRPSMDEVLEVLKRIESGKDEAGHAQDEEPSSPSSVDHDEVKLLMNMKLPPSPRAVTDKWNCRSTSPNVSGQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03527 231 ProSitePatterns Serine/Threonine protein kinases active-site signature. 19 31 IPR008271 GO:0004672|GO:0006468
Vimu3g03527 231 FunFam Wall-associated receptor kinase-like 20 1 184 - -
Vimu3g03527 231 ProSiteProfiles Protein kinase domain profile. 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03527 231 SMART serkin_6 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03527 231 Pfam Protein kinase domain 3 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03527 231 MobiDBLite consensus disorder prediction 217 231 - -
Vimu3g03527 231 MobiDBLite consensus disorder prediction 178 203 - -
Vimu3g03527 231 SUPERFAMILY Protein kinase-like (PK-like) 2 174 IPR011009 -
Vimu3g03527 231 MobiDBLite consensus disorder prediction 178 231 - -
Vimu3g03527 231 Gene3D Transferase(Phosphotransferase) domain 1 1 199 - -
Vimu3g03527 231 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 225 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03527 Vimu-Chr3 48130202 48130897 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03527 1 229 Receptor kinase-like Gene Family AT1G25390 62.069 3.40e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu3g03527 Pkinase 3.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03527 - - aprc:113871893 387.497