Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03525 ATGAAACGAAAATGCACTCCTTCAGATCCTCAACACCAATCGAGAAACCCAGACACTGGTTCAATTGGTCCCAGCGCAAATCTAGACCCCGAAAATTGCAGGTTCTACTACAGAATCCCTCTCTTCTCTTACAAGGAGCTTAAAGAAGCTACACACAATTTCCACCACACCAGGCAACTTGGAAGTGGAGGCTTTGGAACCGTTTACTATGGAAAACTGCTAGATGGACGAGAAGTTGCTATCAAGCGTCTCTATGAGCACAACTATAGGCGAGTTGAACAGTTCATGAACGAAGTTCACATCCTCACTCGCTTGCGCCACACAAATCTGGTATCCCTCTATGGCTGCACTTCACATCGCAGTCGTGAGCTACTGCTCGTGTACGAACACGTTCCAAATGGCACTGTTGCTTGCCATCTCCACGGTGATTTTGCAAGGTCACACACTCTTCCATGGCAGATAAGAATGAAAATTGCGATTGAGACCGCAAGTGCATTGTGTTATCTCCATGCTTCTGACATCATCCACCGTGATGTCAAAACCAAAAACATTCTCCTTACTCAAAGTTTCAGTGTTAAGGTTGCTGACTTTGGTCTTTCAAGGCTGTTCCCGAATGATGTCACACATGTCTCCACTGCTCCACTAGGGACCCCAGGTTACCTTGATCCGGAATATCACGAATGCTACCAGCTTACAAGCAAGAGTGATGTGTATAGTTTTGGCGTTGTGCTTATTAAACTGATATCTTCTAAACCAGCTGTTGACATGAGCAGGCATAGGGATGAGATAAACTTGGCTAACTTGGCAATAAAGAAAATTCAGAAAAGTGCATTTAGTGAGCTGGTTGATCCTTCTCTTGGTTTTGATTCGGACAGTGAGGTAAAGAGGATGATGATTTCAGTGGCAGAATTGGCCTTTCAGTGTTTGCAACGAGACAAAGATTTGAGACCTTCAATGGACGAGGTTTTGAAGGTGCTGATGAGAATTGAAAATGACACGCCTGAGCATCTGGATGAAGAACATTTACGTCCACCCTCTCTACCTTCACCAGATTGGGATGAAAATGGATTATTGAAAAACATGACGGTACAACTTTCACCTAAAGCCGTCACTGATAGATGGCACAGTGAATCTACTGCCTCTAATGCCAGTGCTTAA 1158 0.443 MKRKCTPSDPQHQSRNPDTGSIGPSANLDPENCRFYYRIPLFSYKELKEATHNFHHTRQLGSGGFGTVYYGKLLDGREVAIKRLYEHNYRRVEQFMNEVHILTRLRHTNLVSLYGCTSHRSRELLLVYEHVPNGTVACHLHGDFARSHTLPWQIRMKIAIETASALCYLHASDIIHRDVKTKNILLTQSFSVKVADFGLSRLFPNDVTHVSTAPLGTPGYLDPEYHECYQLTSKSDVYSFGVVLIKLISSKPAVDMSRHRDEINLANLAIKKIQKSAFSELVDPSLGFDSDSEVKRMMISVAELAFQCLQRDKDLRPSMDEVLKVLMRIENDTPEHLDEEHLRPPSLPSPDWDENGLLKNMTVQLSPKAVTDRWHSESTASNASA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03525 385 Gene3D Phosphorylase Kinase; domain 1 29 130 - -
Vimu3g03525 385 MobiDBLite consensus disorder prediction 336 356 - -
Vimu3g03525 385 SUPERFAMILY Protein kinase-like (PK-like) 37 349 IPR011009 -
Vimu3g03525 385 MobiDBLite consensus disorder prediction 1 26 - -
Vimu3g03525 385 ProSiteProfiles Protein kinase domain profile. 54 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03525 385 FunFam Wall-associated receptor kinase-like 20 131 339 - -
Vimu3g03525 385 Gene3D Transferase(Phosphotransferase) domain 1 131 339 - -
Vimu3g03525 385 MobiDBLite consensus disorder prediction 10 26 - -
Vimu3g03525 385 SMART serkin_6 54 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03525 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Vimu3g03525 385 Pfam Protein kinase domain 54 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03525 385 ProSitePatterns Protein kinases ATP-binding region signature. 60 82 IPR017441 GO:0005524
Vimu3g03525 385 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 25 379 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03525 Vimu-Chr3 48121503 48123345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03525 29 385 Receptor kinase-like Gene Family AT1G25390 64.266 2.03e-161 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu3g03525 Pkinase 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03525 - - gmx:100791822 639.802