Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03524 ATGTTTGTTGGAATCGCTGCAGCTCAGGAAAAAGGGTTGCGTCGGAAGGTCAAACTGGCTTTAGGTTTAGGCATTGGAGTCCCATGCATGATGTTAATTGGGTTGTTGTTTTTCCTTCTACTCCGCAAACGAAAACATGCTACCTCAGGCGGACAACTAAAGTCAAGAGATTCTTATTCTGATTCCTCCTCGATTTCTCTTCGAGCAAATAGTGCCGAATACTTTGGAGTTCCACTCTTCTCTTACGCGCAGCTTAAAGAAGTGACAAACAATTTCGACCATGCTCAGGAACTTGGAGATGGAGGCTTCGGTACTGTCTACTATGGGAAACTCCCAGATGGAAGGGAAGTTGCGGTGAAGCGGTTATACGAGCACAATTGGAGGCGAGTAGAACAGTTCATGAACGAAGTTAAAATCCTCACACGGTTGCGTCACAAAAATCTAGTGTCCCTTTACGGGTGCACTTCACGGCACAGCCGTGAACTCCTACTTGTGTACGAATACATTTCAAACGGCACCGTAGCATGTCATCTCCACGGTGGATTATCCAAGCCTGGCTTGCTACCATGGCCTACACGTATGAAAATTGCCATAGAAACTGCCAGTGCATTGGCTTATCTCCACGCCTCAGACATCATCCACCGTGACGTGAAAACAAACAACATTCTCCTGGACAACAACTTCTGTGTTAAGGTAGCAGATTTTGGTCTTTCAAGAGACTTCCCAAACGATGTAACGCATGTCTCCACAGCTCCGCAAGGGTCCCCGGGTTATCTTGACCCTGAATATTATAGCTGCTACCAGCTGACTATTAAGAGTGATGTATATAGTTTTGGGGTTGTGCTTATTGAGCTGATTTCATCCAAGCCTGCTGTTGATATGAACAGGAGTAGGGATGAGATTAACTTGTCAAATCTAGCAGTTAGGAAGATTCAAGAAAGTGCAATCGGCGAGCTTGTAGATCCTTGCCTTGGTTTTGATTCGGACAGTAGGGTTAAGGGAATGATAGTTTCAGTGGCAGGATTGGCTTTACAGTGTTTGCAGAGGGAAAAGGAGTTGAGACCTTCGATGGACGAGGTGTTGCATGAACTGCAGAGAATTGGGAGTGGGAAGGATGAGATAGATGTTGATAATGGAGGAGTTGCAGAAAGTCGTGCACATTCACCACCACCGGCTTCACCGGAGTGGGATGAAGCTGTACTGTTGAAGAATACGAATCCTACTTCCCCTGACACTGTCACTGATAAATGGGAAAGTAAATGTACTACACCTAATATAAGTGGCTAA 1287 0.4553 MFVGIAAAQEKGLRRKVKLALGLGIGVPCMMLIGLLFFLLLRKRKHATSGGQLKSRDSYSDSSSISLRANSAEYFGVPLFSYAQLKEVTNNFDHAQELGDGGFGTVYYGKLPDGREVAVKRLYEHNWRRVEQFMNEVKILTRLRHKNLVSLYGCTSRHSRELLLVYEYISNGTVACHLHGGLSKPGLLPWPTRMKIAIETASALAYLHASDIIHRDVKTNNILLDNNFCVKVADFGLSRDFPNDVTHVSTAPQGSPGYLDPEYYSCYQLTIKSDVYSFGVVLIELISSKPAVDMNRSRDEINLSNLAVRKIQESAIGELVDPCLGFDSDSRVKGMIVSVAGLALQCLQREKELRPSMDEVLHELQRIGSGKDEIDVDNGGVAESRAHSPPPASPEWDEAVLLKNTNPTSPDTVTDKWESKCTTPNISG 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03524 428 MobiDBLite consensus disorder prediction 402 428 - -
Vimu3g03524 428 ProSiteProfiles Protein kinase domain profile. 92 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03524 428 Gene3D Phosphorylase Kinase; domain 1 66 168 - -
Vimu3g03524 428 ProSitePatterns Protein kinases ATP-binding region signature. 98 120 IPR017441 GO:0005524
Vimu3g03524 428 FunFam Wall-associated receptor kinase-like 20 169 376 - -
Vimu3g03524 428 Gene3D Transferase(Phosphotransferase) domain 1 169 375 - -
Vimu3g03524 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Vimu3g03524 428 Pfam Protein tyrosine and serine/threonine kinase 95 363 IPR001245 GO:0004672|GO:0006468
Vimu3g03524 428 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 64 168 - -
Vimu3g03524 428 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 27 422 IPR044652 GO:0004672
Vimu3g03524 428 CDD STKc_IRAK 98 367 - -
Vimu3g03524 428 MobiDBLite consensus disorder prediction 371 428 - -
Vimu3g03524 428 SUPERFAMILY Protein kinase-like (PK-like) 66 364 IPR011009 -
Vimu3g03524 428 SMART serkin_6 92 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03524 Vimu-Chr3 48115776 48117713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03524 17 428 Receptor kinase-like Gene Family AT1G25390 58.696 7.85e-163 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu3g03524 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03524 - - vra:106771857 804.668