Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03515 ATGTTCCCTTTTATTTTGTTGTTTTACTTTTTCCTTCTTTGCTGCTACTCTATTGCACCTTTGGTGCATTCTCTGAATGCCGAAGGCTCTGTGCTTTTGACACTAAAGCAGTCGCTCACAGACCCTCAAGGCTCCATGAGTAACTGGAATTCCTCTGATGAAAACCCTTGTTCATGGAATGGGATCACTTGCAAGGACCAGAGTGTTGTGTCCATCAGCATACCGAAGAGGAAACTCTCTGGTTCTCTCCCTTCTTCTCTGGGATCTCTCTCCCAGCTCCGCCATGTCAACTTCAGGAACAACAAGCTTTTCGGAGACTTGCCTACACAGCTCTTTCAAGCTCAGGGACTGCAAAGCCTGGTGCTTTATGGTAATTTATTTTCTGGGCCTGTTTCTAGTGAGATTCAGAATCTCAGGTACCTTCAAACTCTAGATTTATCACAAAATTTCTTTAACGGGTCATTGCCTGCTGCAATTGTCCAATGCAAGAGACTCAAGTCCCTTGTTCTCAGTCAGAACAATTTCTCTGGCCCCTTGCCAGATGGGTTTGGCACTGATTTGTCTTCTCTGGAAAGACTAAACCTTTCTTTCAATCACTTCAATGGGTCAATTCCCAGTGATTTGGGAAATCTGTCAAGCCTGCAAGGAACTGTTGATTTGTCTCATAATCATTTTAGTGGTTCAATTCCAGCCAGCCTTGGTAATCTGCCTGAGAAGGTTTACATTGATCTTACTTTCAACAATTTAAACGGTCCAATTCCTCAGAATGGTGCTTTGATGAACAGAGGACCAACTGCCTTTATTGGCAATCCTGGTCTATGTGGTCCTCCTTTGAAGAATTCATGCAGTCCTGATACTCCATCTGCTAGTTCACCTCCATCGTTTCCATTTATTCCAAATAACAGTTCGGCTGAGGGTTCCATGGGAAGTGAGAAAAATAAAGGGCTAAGTACGGGAGCTGTGGTTAGCATTGTTGTGGGTGATATAATTGGAATTTGCCTCTTAGGTTTGCTGTTCTCTTTTTGCTACTCAAGGGTTTGTGGTTTTAACCAGGATCTTGATGAAGATGGAATTAACAAGGGAAGCAAAGGGAGGAAAGAGTGTTTCTGTTTCAGAAAGGATGAATCGGAGGCCCTGTCTGATAATAATGTTGAGCAATATGATCTTGTCCCATTAGATTCCCATGTGACTTTTGATTTGGATGAGCTTCTCAAGGCTTCAGCTTTTGTTTTGGGTAAGAGTGGAATAGGGATTATGTACAAAGTGGTGCTTGAAGATGGGCTTGCTTTGGCTGTGAGGAGATTGGGGGAGGGAGGTTCTCAAAGGTTTAAAGAGTTCCAAACCGAGGTAGAAGCAATAGGGAAGTTAAGACATCCAAATATTGCAACTCTGAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATATATGATTATATATCCAACGGAAGCCTTGATACAGCAATTCATGGCAAGTTTTGTTAA 1488 0.4267 MFPFILLFYFFLLCCYSIAPLVHSLNAEGSVLLTLKQSLTDPQGSMSNWNSSDENPCSWNGITCKDQSVVSISIPKRKLSGSLPSSLGSLSQLRHVNFRNNKLFGDLPTQLFQAQGLQSLVLYGNLFSGPVSSEIQNLRYLQTLDLSQNFFNGSLPAAIVQCKRLKSLVLSQNNFSGPLPDGFGTDLSSLERLNLSFNHFNGSIPSDLGNLSSLQGTVDLSHNHFSGSIPASLGNLPEKVYIDLTFNNLNGPIPQNGALMNRGPTAFIGNPGLCGPPLKNSCSPDTPSASSPPSFPFIPNNSSAEGSMGSEKNKGLSTGAVVSIVVGDIIGICLLGLLFSFCYSRVCGFNQDLDEDGINKGSKGRKECFCFRKDESEALSDNNVEQYDLVPLDSHVTFDLDELLKASAFVLGKSGIGIMYKVVLEDGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYISNGSLDTAIHGKFC 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03515 495 SUPERFAMILY L domain-like 27 278 - -
Vimu3g03515 495 FunFam Leucine-rich repeat receptor-like protein kinase 25 181 - -
Vimu3g03515 495 ProSiteProfiles Protein kinase domain profile. 405 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03515 495 PANTHER OS05G0588300 PROTEIN 134 487 - -
Vimu3g03515 495 FunFam Leucine-rich repeat receptor-like protein kinase 189 284 - -
Vimu3g03515 495 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Vimu3g03515 495 MobiDBLite consensus disorder prediction 280 310 - -
Vimu3g03515 495 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515
Vimu3g03515 495 Gene3D Phosphorylase Kinase; domain 1 372 480 - -
Vimu3g03515 495 MobiDBLite consensus disorder prediction 295 310 - -
Vimu3g03515 495 FunFam Leucine-rich repeat receptor-like protein kinase 388 480 - -
Vimu3g03515 495 SUPERFAMILY Protein kinase-like (PK-like) 410 492 IPR011009 -
Vimu3g03515 495 SMART LRR_typ_2 90 114 IPR003591 -
Vimu3g03515 495 SMART LRR_typ_2 138 162 IPR003591 -
Vimu3g03515 495 SMART LRR_typ_2 187 211 IPR003591 -
Vimu3g03515 495 Gene3D Ribonuclease Inhibitor 19 77 IPR032675 -
Vimu3g03515 495 Gene3D Ribonuclease Inhibitor 78 286 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03515 Vimu-Chr3 48007520 48009007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03515 6 493 Receptor kinase-like Gene Family AT2G01210 66.869 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu3g03515 LRRNT_2 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03515 - - gmx:100807517 827.78