Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03514 ATGAAAGGAACCGCAAGAGGATTGGTCTATCTGCATGAATTTAGCCCCAAAAAATATGTACATGGAGACCTGAAGCCAAGTAACATACTTCTTGGACACGACATGGAACCCCACATTTCTGACTTTGGAGTTGGGCGCCTTGCAAACATTGCTGGAGGGTCGCCAACCTTGCAATCCAACCGAGTGGCTGCAGAGAAACAACATGGAAGACAAAAGAGCATCTCCACTGAAGTCACTACCGGTGTGATGGGAAACGGTTATATGGCTCCAGAAGCACTGAAAGTTGTGAAGCCATCACAGAAATGGGATGTTTACTCATATGGAGTGATATTGTTGGAAATGATCACAGGAAAACCATCTATTGTCCAGTTGGGGAACTCAGAAATGGACCTTGTTCAGTGGATTCAGTTCTGCATTGAGGAAAAGAAGCCACTCGTGGATGTGTTAGACCCTTACTTGGCTGATGATGCAGATAAGGAGGAGGAGATTATCGGAGTTTTGAAGATTGCAATGGCTTGTGTCCATAGCAGCCCTGAAAAGAGACCTACGATGAGGCACGTGCTTGATGTTTTGGATAGATTGACTATTTCCTCTGATTGA 600 0.45 MKGTARGLVYLHEFSPKKYVHGDLKPSNILLGHDMEPHISDFGVGRLANIAGGSPTLQSNRVAAEKQHGRQKSISTEVTTGVMGNGYMAPEALKVVKPSQKWDVYSYGVILLEMITGKPSIVQLGNSEMDLVQWIQFCIEEKKPLVDVLDPYLADDADKEEEIIGVLKIAMACVHSSPEKRPTMRHVLDVLDRLTISSD 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03514 199 ProSitePatterns Serine/Threonine protein kinases active-site signature. 19 31 IPR008271 GO:0004672|GO:0006468
Vimu3g03514 199 Pfam Protein kinase domain 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03514 199 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 193 - -
Vimu3g03514 199 SUPERFAMILY Protein kinase-like (PK-like) 2 191 IPR011009 -
Vimu3g03514 199 Gene3D Transferase(Phosphotransferase) domain 1 1 198 - -
Vimu3g03514 199 SMART serkin_6 1 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03514 199 ProSiteProfiles Protein kinase domain profile. 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03514 Vimu-Chr3 48006744 48007343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03514 1 199 Receptor kinase-like Gene Family AT2G01210 67.633 9.46e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu3g03514 Pkinase 6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03514 - - gmx:100792873 364.77